DreEX0046139 @ danRer10
Exon Skipping
Gene
ENSDARG00000068893 | mettl5
Description
methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
Coordinates
chr9:48429770-48431661:+
Coord C1 exon
chr9:48429770-48429884
Coord A exon
chr9:48430491-48430672
Coord C2 exon
chr9:48431579-48431661
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCATTATCTTTCCTCACAAGCTT
3' ss Score
4.67
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCTGTATGTTGTACACCATCCACAACACATTTGATGACATACAGAATAAACTGGTGGCAGATCTGGGCTGTGGATGTGGAGTTCTGTCTATAGGAGCTGCAGTCCTTGATGCTGG
Seq A exon
CTTGTGTGTTGGATTTGACATCGATGAAGATGCCTTGGACATATTCAGAGGAAATGTTGAAGAGTTTGAACTGCCAAACATTGATGTGGTCCAGTGTGACGTGTGCTCGATTGGATCTTCTTATGCTAAGAAGTTTGACACGGTCATCATGAACCCGCCGTTCGGCACAAAACACAACCAGG
Seq C2 exon
GTATTGACATGCAGTTCCTGCAGACAGCGATTTCTATGGCAACCAGTGCAGTGTATTCCCTTCACAAGACCTCAACACGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068893_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(30.9=97.4)
A:
PF063258=PrmA=PD(15.5=17.6)
C2:
PF051759=MTS=PD(18.7=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATGTTGTACACCATCCACA
R:
CGTGTTGAGGTCTTGTGAAGGG
Band lengths:
194-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]