MmuEX0028754 @ mm9
Exon Skipping
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69717159-69719468:-
Coord C1 exon
chr2:69719354-69719468
Coord A exon
chr2:69718824-69719005
Coord C2 exon
chr2:69717159-69717241
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTCTATTTATAGGTT
3' ss Score
11.1
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CATGCATGCTTTATACAATCCATAACACATACGATGACATTGAAAACAAAGCGGTTGCAGATCTAGGATGTGGCTGTGGAGTACTTAGCATCGGAGCGGCAATGCTAGGAGCAGG
Seq A exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAGAATGTGGAAGAGTTTGAGCTAACAAATGTTGATATGATTCAGTGTGATGTGTACTCATTATCTAACAGAATGTCCAAGTTATTTGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
Seq C2 exon
GGACAGATATGGCTTTTCTGAAGACTGCTTTGGGAATGGCAAGAACAGCAGTATATTCTTTACACAAGTCCTCAACTAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730-'1-5,'1-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(30.4=100)
A:
PF051759=MTS=FE(48.8=100)
C2:
PF051759=MTS=PD(18.4=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGCTTTATACAATCCATAACAC
R:
GAGGACTTGTGTAAAGAATATACTGC
Band lengths:
186-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: