MmuEX0028754 @ mm10
Exon Skipping
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69873884-69885615:-
Coord C1 exon
chr2:69885249-69885615
Coord A exon
chr2:69880767-69880948
Coord C2 exon
chr2:69873884-69873935
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTCTATTTATAGGTT
3' ss Score
11.1
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTACTTCCGGCACTGCGGGGAGGGACCGCGAGGACCAGCTAGAGGCATACGAGTGCTTTCCTGGAGCGTCTGGGTTCCACGGGCGGCGATCCCCGCGAGGCTCGTGGGATCCCCTCGCTGAGTCCTAAATAGTCTGTCCCCGACCCTCCACCCCACCCCCACCCTGCACCGCTGGGGAGTTTCGGGTTAGGTAGACTTCCCTGCAGCTCCCGTGCTGTGAAGCCCCAGGAGCCCAAACTTTAAAATACAGAGAAAACGATGAAGAAGTTAAAGCTTAAGGAACTAGAGAGTCGCCTGCAAGAAGTGGATGGATTCGAAAAGCCCAAGTTACTTCTAGAACAGTATCCCACCAGGCCGCACATTGCAG
Seq A exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAGAATGTGGAAGAGTTTGAGCTAACAAATGTTGATATGATTCAGTGTGATGTGTACTCATTATCTAACAGAATGTCCAAGTTATTTGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
Seq C2 exon
CATATTCAAAAGAAAGCTGCTGAATGGAAAGTCAAGATAGAAATTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730_MULTIEX1-2/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(1.6=5.4)
A:
PF051759=MTS=FE(48.8=100)
C2:
PF051759=MTS=PD(4.7=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGCTGGGGAGTTT
R:
ATCTTGACTTTCCATTCAGCAGCT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types