MmuINT0098057 @ mm10
Intron Retention
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69873884-69879184:-
Coord C1 exon
chr2:69879102-69879184
Coord A exon
chr2:69873936-69879101
Coord C2 exon
chr2:69873884-69873935
Length
5166 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
AATATATTATTTGTCTTTAGCAT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GGACAGATATGGCTTTTCTGAAGACTGCTTTGGGAATGGCAAGAACAGCAGTATATTCTTTACACAAGTCCTCAACTAGGGAA
Seq A exon
GTAAGCTCATAATATTATCATTTTAGGTGGCCCACACCTTTAATCCCAGCACTCAGGAGGTAGAGGCAGGTGGATATCTGAGTTCAAGACCAGCCTGGTCTATGAAATGAGTTCCAGGACAGCCGGGACTATACAGAGAAACCCTGTCTGAGAAAACAACAACAAATAATAATTATTTTTATTATTTTATTTCCTGATTGATTTTCATGTATATGTGTGAGCACATATCAACATACATATGGAGGTCAGATCAACCTAGGAATCAGTTCTCTTCACCATGAAAATCTCCAAGACCAAACTCAGACCCACCATCAGGCTGGGTAGCAAGTGACCTTTACCCACTGAGCCATCTCACTCATCCGAGGGTAAATTTTTATAAAAACACAGCTTAAAGCAAAATAGATCTGAGTTCAGAAGCCACCTATTCTAGGCTGGTGAGATGGCTCAGTGGACTAGGGACTGGGTTGCTGGCAAGCAAGACTACTTGAATCAGATCTCTAGAACCCACGTGTGTGCTATGGAATACATCACACAAATATATGAATATTATAAAAAGAAAAAAAGCTCATATAATACTATGTACAAGATGTATTTCAGGACATGGTGACGAGTTATTATTTGAATGTTACTATAGCATGACTCTAGACCCAGACTGTCCTGAATTAGCACATAAGCTCTGCTACATCTTAGCTGTTACCCTGCTCAAAATTACTTGGGTTTCAGTACCATCTATACTATATGACCCTGTGTTCTTAGGAACTAAGAATAGGCTGTACTTCATATACTTTTCTGGATTAAATGAGTTAGTATGTATGAAACATTTAGGTCTGTGTCTGGCATATTTGCTAGTTGTTATTTTTACCTGAAATTATATATCTAAAGATTTGGTTTTGTTAATCTTATGTATATAAGGAATGTTTTGCCTGTATGTTTGTATTCAACATGTGTGCCTGGTGCCCAAGGAGACCAGAAGAGGGCATCATTCCTAGGACTGGATTTATAGATAGTTGTGATCTATCAAGTGTGCTAGAATTTTTTTTTTAATTTATTTACGTATTTAATGTATGAGTGCTCTGCTGCATGTACACCCATGCACCCAGGAGAGGGCATCAAATTCCGATTGAACTCAGGACCTCTGGAGTAGCAGCCAGTGCTCTAAATGGTTGAGCCATCTCAACACCTGTGCTAAGAATTTAACCAGGTCCTCTGAAGTACAGCAAGTGCTCTAACTGCTAAGTCACCATTCCACCCTCCTTGTTTTCACCTGCCCTTATCTAAGAAAAGTTAAGACAGCAAAAGAGAAAGACACCAAATATCAACCCAATATCAACATGCCATGTATATACATGCACACAGCAAAAAGAAAAAGAAAGTACAGGTCAAAGGAATACATTTTGAGTAAGCCTCTTTAAAAGGGTAAGATTGAGCTGGGCAGTGGTGGCACACACCTTTAATTCCAGCACTTAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCTGGTCTACAGAGTCAGCAGGGCAATACAGAGAAACCCTGTCTGGGGGGGGGGGGCTGGGGGGGTGGCAGATATATATATATACATATACATCTATATATACACACACACATATGCTTGTTAATACATGCCTGCAGTCCTAGCACTTGGGAGGTAAATGCAGGAGGATGGTAAATTTAATATCATATCAGGTTCAAAGGATATTAAAGTCTTATATACACAGACTACCTCACAAAGCCCAATCATAGCATACACCAGATATGATGGTTAGTTCCAGTGTTCAGGAAGTAAAGATAGGAGTATCAGCAGCTCAGGGTCCTCTGCTTCATAAGAGGTTTCAAGGCAGTCTGGGATACATGATACCCTGTCTCAAAAACTGTAAGTAGGTCAACAAAATGAATGACTCAGCCAGTAAAGGTGCTTGCCCCAAGCCTATTGACCTGAATTCAATCCCTATATTGTTGTTTTGTTTTGCTGTGATTAAAATATCCTGACAAAAACTAGCTTGGGTGGGTGGGGGGGCGGAGAACAGGTTTATTTTAGCTCACTAGTCTACAGTTACAGTAAATCATATTAGGGAAGTCAAGGCAGGAACTTCCACCAATTAGTCAAAAGCAGGAGAAAAGGCATACGTGCCAGTGCTCAGCTTCTCTGCATTTACCCAGTTCAGGATGGAAACCCAGGGAATGGTGTTGTCCAAAATGGCCTTTCTTTTCAATTAACATAAGCAAAACAGTCTTCCTGGGGGCTGGAAAGATAGCTTAGAGGTTAAGAGTACTTGGTGCTTTTACAGAGGACCCAGGTTCTATTCCCAGCATCCAGCTCTCAACCATCCGTAACTCCAGTTATGGAAAATTTGATGCCTTCTTCTGACCTAGGGCATTAAGAATAGAGACTGCACAACCATACATTCAGGCAACACACTGAAAAAAAGAATCCACCCACAGGCAAACAATCTAATCCCTCACTGATATTCCCTTACCTAGATTCTAGAGTGTATCAGGTCATCGGGCTGAAGAAGGGGCGCAGTTGTTGAGTTCTTGCTGTATTTGCAGAGGAGCTGAGTTCAGCTCATAATAATGGATACTCCAGCTCCAGGGGATGTGATTCCTCTGGCTTCCGAACAAACCTGCACTCACCATCCATACAGCCATATATACACAAGTGTGTACACACACAGGAACTAAAAATAGTCAAGGGGCTAGAGAGATGCCTCAGTGGTCAGTCACACTAGCTGCTTTTGCAGAGGACCTGGTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTTTTACTTATTATTATAGTAAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAGAGGACCTGGTTTTAATTCCTAGTACCCACCTGATGACTCACAGCTGTCCTGTCACTTACTCTAGTCCCAGGAAATGCACAAAGACAGATCTTAAAAATAAATACAATTTACTTACTTCATCTTTGCTGATTAATATCACCAATTACACACACACACCCGGGGGGGGGGGGCAAATTATCAGCATCATTTTGTCAGATTTCAATGTTTCTTTTTCACTTGATGCAAAATTATTTCCATTAGAAAATTAACTAACGTATGTGATTGATTTGGTGAGTACTACGTATACTGGAAATGAGTTTTCCTCAAATATTAAGACAGCCCTTTATTGTATTTTATAGATATACCTGTTGTAAAGCTTGTAAGTTCCCTTCAGTATTACTTAGTACATATACTGACTGTCCCTAGCCTATCCCAGGTTCCAGAACTACAGGCCATAGTGATGAAGTGCTTGACTTGCTACTCATAGTATAGATCAATTTTATGTAATTGTTTGATAAAAACAAGTTTTAAAGCTTCCTGGCAGATGGTGACTTAGTATTTAATTTTTTTACCTCATGCAGCCTGGGGAGAATTTGCTTCTTTGTGCATAGACAGAGTAGAATAGGTAAACCTGAGTCTGCTCTTTTGTCTTTTTTTTTTTTTTATTGGATATTTTATTTACATTTCAAAAGTATATGTCCTAGTTTCCCTCCCTCCTGGAAACACCCTATCAACATCTTCCCAATCCCCAGCTTCTATGAGGGTGTTCTTCCACCCACCTCCTCCCACCTCCCCACCCTAGATTCCTGTACACTGGGGCATCTATCGAGCCTTCATAGGACCAAGGACCTCTCCTCCCATTGATGCATGACAAGGCCATCCTCTGCTACATAAGCAACTGAAGCCATGTGTACTCCTTTTTTGATGGCTCAGTGGAGTTCTGAGGGGGTCTGGTTGGTTGATATTGTTTTCTATGGGGTTGCAAATCACTTCAGCTCCTTCAGTCCTTTCTCTAACTCCTCTACTGGGGACCCTGCACTCAGTCCAATGGTTGGCTGTGAACATCCCCCTCTGTATTTGTCTGCTCTTTTGTTTATCCCACTTATCCAGTCTTTCCTTTACATCTCTAATAGCATATGGTTATATGGTATTATATATCTCACCAGCCTTAGCGATCAATGAATGTCACAACCTATTTCTCACAAATCCGTCAAGATTCCTAAAATTTCATAAACTATAAAGCATCATTGTACTAAAAGTCTGTATCCTACAGAAATTCTACATTTTTTTTTTAATTTTTTTTTTTTTTAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCCGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTTTTTTTTAATTTTTAAGACTTACTTATGTATAAGCATACTGTCATTGTCTTCAGACACACCAGAAGAGGGCACTGGATCCCATTAGAAATGGTTGTAAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGACATCTGGAAGTGCTCTTAAACAGAGCCACCTCTCCAGCTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTGTCCCAATATGGCCAACATGTAATAGCACATTTCAATGTCTCTCAGCATTCTGGAGTTCTATACATACATAACTTAATGTATCTGGTGCTATGTAAGAACACTGTTCAGAATGTTCAAGAGATGAGAAAAATGAGGCAGTTAGGTGCTAAGACGTAGGCCTGCAGTTCCAAAGGCCATGGTTCCAGGCCATGTTCTTTTCTACCACTTTGTCACTGAATTTCCTGTTGACATTAGTTAGATCTCTGCCAAATACTCCCAGGATGTTATTCACTACTGAAATAAAGTTACCTTCTGTATTTTGCAGGTTTTGGTGGATTTTTCAGTTTTTAATTACATAATTCAGGTCTGACAATAAACACTGAAGTCACTTTGTTTCTGGCTTTTAAAAGTGTGCACATAATAAAATTTTTTATTATCTAATTTTTATTGAAATTTTAATCTCAAATATTAGCAAGTCAGTTTAAAAATCATCTAAACATCAACTCATATAAATATATTATTTGTCTTTAG
Seq C2 exon
CATATTCAAAAGAAAGCTGCTGAATGGAAAGTCAAGATAGAAATTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730:ENSMUST00000060447:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PD(18.4=82.1)
A:
NA
C2:
PF051759=MTS=PD(4.7=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types