BtaINT0092071 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026008 | METTL5
Description
Bos taurus methyltransferase like 5 (METTL5), mRNA. [Source:RefSeq mRNA;Acc:NM_001099135]
Coordinates
chr2:26586105-26591412:+
Coord C1 exon
chr2:26586105-26586187
Coord A exon
chr2:26586188-26591360
Coord C2 exon
chr2:26591361-26591412
Length
5173 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ATTAACATGTTTATGTTCAGCAT
3' ss Score
4.57
Exon sequences
Seq C1 exon
GGACAGATATGGCATTTCTGAAGACTGCTTTGGAAATGGCAAGAACCGCAGTATATTCTTTACACAAATCCTCAACTAGAGAA
Seq A exon
GTAAGTTCAAATCATCAAAATATTCTGTGTCATTATTTTTAAATTCATGACAGTGTTTGAAGGATTTACTATCAGTACTAAATACCAAGATATCTAATTCTCCTGAAATTTTTAAACATCTGGCACTTAGAAACTGAATTTTCTCCTTAACTAGCATTTATGAGTAGCTTTATTTGTCAAAGATTTGTCCAGGCAGGAATTAACAGGAAAGAGATTATATAATTCAGGAATAGAGAAGTATGGTGTAACTGTGGTTACAATATCTCCTGGTTTGCTTGGGTAAGTCCTGGTTGATACCTGTAATCCCAGTGTCTCTGTATGGCCTAGTGTACTTAAGAGAGGCAAGGACAGCCTGGTTTTTAAGAACACTGAGACTGGGAAGCTAAACTAAGCTGAGTTCAGAACCCATTTCTTCCATTATTTTTTATTGTCAACACATGACACATGAAGGTGCATAAGACATATTCTAGAAAACTGGGGATGGGGTGGCACAGTTTTTTAGTGTTAGTTTAACACAGTGATCAAGAACACAGACTGTAGAGCCAGACTACCTAGGTAGGTTCAAATCTGCTGCTTCACAGCTGTCTTCTCTTGGTCAAGGTTCATTTTGAGTTCATTCGAGTTCACTTTCATCACTTACACTGTACTCACCTATACTCTTACAGCATAAGGAACTAAGAGTACTTTATACTTTGTAGGGTTGATGTGAGGATTAAATGAGTTAATGTTTACAAAGCACTTAGAATAGTGTATGGCAATTGCTATGTTAGTGGTTATTTTTAAGTGATATATGTATTAAGAGATTTTAAGATTTTGTAGGAAAAATATTTGTATAAATACAGTGTACTGGAATTCAGTTGGGAACAAATTATGACTATATGGTAATCTAATAATCTTTAAAATACATAAAATCGCATAGCTAAAAGGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTGAGGGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGTCTGGAGAATGCCAGGGACAGGGGAGCCTGGTGGGCTGCCATCTATGGGGTTGCACAGAGTCTGACACGACTGAAGCAATTTAGCAGCAGCACATAGCTAAAAATATATATAGGCATACCTCGTTTTACTGCCCTTTATTGTGTGGGGCTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGTAGCAGCATTGTGTGGGGCTTCCCCTGATGGTTCAGATGGTAAAGAATCCACCTGCAATGCAGGAGACCTAGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACCCCAGTATTCTTGCCTGGAGAATCTCCATGGACAGAGGAGCTTGGTGGGCTACAGTCCCTGGGGTCACAAAGAGTCAGACAAAACTGAGCCACTAAGCATAGCATAGGATTGCACTGTACAGATAATGCATTTTTGCAGGTTTAAGGTTTGTGACAACCTTACTTGAAGCAAGTCTGTCAGCACCATTTTCCCAACAGCATTTACTCACTTTGTGTCTCTGCTCATTTTGGTCATTCTTGCAATATTTCAAACTTTTTTATTGTATTTGTTGGGTGTTGGTGCTCTTTGATATTACTGTTATAGTTGTTTTTGGCATTGTTTAGCAATAACTACTACTACTACTAAGTCGCTTCAGTCGTGTCCGACTCTGCGACCCCATAGACTGCAGCCCACCAGGCTCCGCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCAACTCTTCACAACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGGTTTAGCAATAAAGTAGTTTTTAATTAAAATATATACTTTTGGGGGACTTCCCTGGTGGTCCAGTGGTTAAGAATCTGTGCTTCCACTTCAGGGGGCATAGTTTGATCCATGGTTGGGTAACTAAGGTCCCACATGCTGTGAGTTCCAGCCCCCAAAAAAGTACTTTTTAAAGACATAATGCTATTGCACACTTAAAAGCCTACAGTATAGTGGAAACAGAACTTTTATATGCATGGGAAACAAGCATTCAGGTTACTTAGTCTTGTGATATTCACTTTATTATTTTGGTCTGTTACCAAGCCTGTAATATCTCTGAGGTACGCCTGAATACTGCTAAACAATTAGTAGTGATACATTTAGGTAAGCAGCAGAACACAATATAACTTTCAGTTCAGTTCAGTTCAGTCACTCAGTCATGTCCAACTCTGCGACCCCATGAATCGCAGCACGCCAGGCCTCTCTGTCCATCACCATCTCCTGGAGTTCACTCAGACTCACGTCCATCAAGTTGGTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTTTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTGAGCTTTAGCATTATTCCTTCCAAAGAACACCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGTAGTCCAAGGGACTCTCAAGTCTTCTCCAACACCACACTTCAAAAGCATCAATTCTTCGGCACTCAGCTTTCTTCACAGTCCAACTCTCATCCATACATGACCACTGGAAAAACTTTACTGGTAAATAAATCCCCATTCAGTGAGACCAAACAGCAGTAATTATTGATATCTAAAAAGCCTGTATTGAGGAGGTCCCCAAGACCATCCTCAGGTTTGATGATTCACAGGGAAGTCTAACAGGACTGAGCATATAGTCATACTCATGACTGTGATTTATTACAGCTAAAAGTTACAGAGCAAAATCAGCAAAAAGGGGTGGCTCAGATGGTAAAGCATCTGTCTACAATGCGGGAGATGCAGGTTCGATCCCTGGGTCGGGAAGATCCCTTGGAGAAGGAAATGGCAACCCACTCCAGTACTATTGCCTGGAAAATCCCATGGACGGCGGAGCCTGGTAGGCTACAGTCCATGGGGTTGCAAAGAATCAGACATGACTGAGCAACTTGGTTGGTTGGTTGGTATAGGTCACAGTCCAGGAGAAACTAGGTGCAAGCTTCCAGAGTTCTCTCGCAGTGGAGTCATATGGGATGCACTTAATTTTTCCGGCAAAGAATTTTTGTGACAAGGCACGTGAAATGTTGTTAACCAGGGAAAGGTCACTGGAGACCTGGTGCCAAGGGTTTTTACTGGGGACTGATCACATATGCTCCCCCTTGCCTGGCATATACCCAAATCCCAGACTCCCAGAAGCAAAACAGGTATTCAGCATAAAGAGTTTAAGTACAGTAAGCCGCTGTTATTAAGGAATGGGCAGTGAAAACTCTCAAAAATCTAAGTTCCCATACTCCAACCAAAGGTGACTAATATGTAGATCTTCCAAGGATAAGCAGTCAGGCCTGCTGTGGATTCTTCTGCACAGCCTGGCATAGGTCTTATATTACTCATACATAGTTCATGAAAACCAAGTAAAATATGCCAATAAAGAGTGCAACTAAGCAGCAAAGTCTAATAACTTGAATAAATTCCTAGTCACATTACCAGGGAATGCCTGTCTTCATTGTTTGGTATTGCCATGTTCCACCACCAGGAGGCAGCAGTATCAGCATTGTCTTGGCTGCTTTAATAGAATTTTAAGCAAGTATCTCTGGGACATGTGAACATGTGGACAGGGAACCCTGGCGTGCTGCAGTCCATCAGGTCATGAAGAGTTGGACATGACTGAGTGAACTGAACTGAGGCAAATATTTACTTAAATACAGTTTTATATTTTGGCAATGCAGAAGTATTTCCATTAGCAGAGTAACTAAATAGTTTGAGAAATTAATCTGGTGTGTGTTGTGCATATTGTGAAGGAGGTGTGATGATGAACTTCTAGTATTAAACATCCTTAGATTATGCTGTAGATATATCTGCTATAAGCCTTGTGATAATTTTGCTTAAGTATTCTATTGTAACTAGTATCATTATCATTGAAGCTTATTTCAGACAGACCCCTTAACTATAGACCCTTGTCTCTCTTAAGTACTTGGCCCTCTATTCATAATATAGGTGCATTTGATACAACTTTTTGATAGAAAATTTGATAGAAAAGCCATGTCCTGGCAGACTTATACAATTTACTGAAAACTTCCACTGGAAGCCAAGTATTTGTTCTTTGCAGGCTCAGACAGAACCTTATATATCATCACAGTGACTCCAATAAGCTAGATGACTCTAAAAGTTGTTGCCTTATCTTTCATTAGGCATTATAAGAACTTAAGTTCTTGGCTCATAGTTAAATATGTGAACCTTAAATTTAGGGAAATTTAAATAGCTAAAACCAGCATTTAGTACTTGTTTTGTGTGCCACCACAGTTCAAAGCACTTTTCAGTCTACAACCATCTGATGAGATACCATTACTATCTTCATTTAACAGATGAGGGACCTGAGGCACAGAAAGCATAATTTTCTCAGAGTTACACAGCTAACAGAGCTTTAGTTCAAATGCAGGGTGTCTGATTCCAGAAACTGTCCTTAACCTCTATACCATACTGCCACTGAATTGCCCATGGACAGATCTCTGCTGGTTTCTGGGAGAGCTGTGTATTTATCTTTAATATTTTTATGCACATCAAAGTCCATCAAAGGACTCTGAAGTAACAGCTTTATTACTTGAATTATATAGTTAAGATTATTAAACGGCTTGGCTTCTTACTAAAATATTATCCATCCAGTTGAAAAAAATTTTAAAGGTCTAAATTCTAATGAAACTTTAAAAGCTTGAAAACTTACAATCAAGTATTAGTAAGAAGCAATTTTTTGAAAACTGTTTTAAGACCAACTCACATTAACATGTTTATGTTCAG
Seq C2 exon
CATATTCAAAAGAAAGCTGCAGAGTGGAAGGTCAAGATAGATATTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026008:ENSBTAT00000056291:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(19.4=100)
A:
NA
C2:
PF051759=MTS=PD(7.2=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]