RnoINT0091794 @ rn6
Intron Retention
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56104147-56108342:-
Coord C1 exon
chr3:56108260-56108342
Coord A exon
chr3:56104199-56108259
Coord C2 exon
chr3:56104147-56104198
Length
4061 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
GGAAATATTATTTGTCTTAGCAT
3' ss Score
1.3
Exon sequences
Seq C1 exon
GGACAGATATGGCTTTTCTGAAGACTGCTTTGGGAATGGCAAGAACAGCAGTGTATTCTTTACACAAGTCCTCAACTAGAGAA
Seq A exon
GTAAGCTCATTATTTTATTTTTACTATTTTAGGTGGCCCACACACAGCTTTAATCCCAGCGCTCAGGAGGCAGAGGCAGCCTAGTCTATGGAATTAGTCAAAAGAAGGAGAAAATTCATGTGTGTCTGTCAGTGTTCACCTTTTCTACATTACCAGTTCAGGATGAAAACCCAGGGAGGGAATGGTGACGCCTAGAATGGGCTTTGTCTTTCTTCTCAATTAACATAAAACAATCTTCCTGGAGAGATAGCTTGAGGTTAAGAGCACTTGTTCTTACAGAGGACCCAGGTTCACTTCCCAGCACCAATATGGTGGCTCTCAACCATCCATAACTCCAGTTCCAGGGAATATGATGCTTTCTTCTGACCTAGGGCACTAAGAATATAGACTGCACAACTCAGGCAAAGCACTGACGAAACCACCCACAGGGCAAACACTTACTCCCTTAATGAGATTCTCTTACCTAGATTCTAGAGTGTATCAGATCATTGGGCTGAAGAAGTCACTCAATTGTTGAGTGCTTGCTACATTTGCAGGGCTGAATTCAGCTCACGACAGTGGGTACTCCAGCAGCTCCAGGGACTGTGATACCTCTGGCTTCCAAACAAACCTGCACCCACTCAGTATCATACAACCACATGTACACATGTGTGTACACAGAGAAACTGTGTATGTATAGTACTCCAGAATGAGAGACATTGAAATCTGTTATATACATATTAGCCTTATTGGGAATCATCTTTAATTGAAGTCAAATTGATAAAATAATTTTCTTAATAGTTTAGGCTCAAATATTTCAGATACTATAACTTTTTGTCTATGGTGTCCTGTTTCATATCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACAAAGGGCTGGAGAGATGACTCAGTGGTTAAGAGCTCTTACAGACATGGTGGCTTACAACCATCTCTAATGGGATCCAGTGCTCTCTTGTGTGTCTGAAGACAGCGATGACAGTGTACTTATATACAAATAAATCATAAAAACCACAAAAAGAGGGCTGGAGAGCTGGCTCAGTGGTTAAGAGCACTGACTATTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGCTGGCTCATAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAATAATTTTAAAAGTCACAAAAAGAATATAGAATTTATGTAGGGATTAGACTTAATACAAATGCTACTTTTTATAATTTATGGAATTTTAGGAATCTTGACAGATTTGTGAGAAATAGGTTGTGATATTCATTGAGTGCTGAGGCTGGTGAGATTCTCTAATAGTATATGGTTTGTTATGGTAGAGATGTAAAAGAATAGAAAAGGGCTAGAGAGACGCCTCAGTGGTTAGTAACAGTAGCTGCTTTTGCAGAGGACCTGTTTTTTTTTTTTTTTTTTTTCTTTCCTTCCATCTTTATTAACTTGGGTATTTCTAATTTACATTTCAAATGTTATTCCCTTTCCCAGGGTTCCAGGCCAACATCCCCCTAGCCCCTCCTCATTCTCCCCCCATTACCACCCACCCCCCAACAATCAGTTCACTGGGTGTTCAGTCTTGGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGCTATTCAATGCTACCTATGAGTTGGAGTCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGGTTGGCATTGTTGTTCATATGGGGTCTAGAGCCACTTCAGCTCTTTTAGTCCTTTCTCTGATTCCTTCAACGGGGGTCCCGATCTCAGTTCAGTGGTTTGCTGCTGGCATTCACCTATGTATTTGCCGGATTCTGGCTGTGTCTCTCAGGAGAGATCTACATCCGGTTCCTGTCGGCCTGCACTTCTTTGCTTCATCCATCTTATCTAGTTTGATGGCTGTATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCAACCTCTGTTCTAAACTTTGCCTCTCTATTCCCTCCCAAGGGTATTCTTGTTCCCCTTTTAAAGAAGGAGTAAAGCATTTGCATTTTGGTCATCCTTCTTGAGTTTCATGTGTTCTGTGCATCTAGGGTAATTCGAGCATTTGGGCTAATATCCACTTATCAATGAGTGCATACCATGTGTGTTTTTCTGTGATTGGGTTAGCTCACTCAGGATGATATTTTCCAGTTCCATCCATTGACCTAGTTTTAATTCTGGTATCCACAAGATGACTCACTCCAGTCCCAGGAGATTCAGTGCTCTCTTCTGGCCTCTGAGGCACCAGGCACACATTACACAAAGACAAATCATAACAAATAAAATTTACTTACTCTCATCTTTGCTGATTGGTATTGCCAATTACATGCCTCTTGGGGAGGGGGGTGGCAAAATTATCAGTGTCACTTTGTCAGATTTCATTGTTTCTTTTTCACTTAGTGCAAAATTATTTCCATTAGAGAAGTAACTTATGTGATTGATCTGGTGAGTAGTATGTACACTGGAAAGAGTTGTCCTCAAATATTAAAGCAGTCCTCTATTGTGTTACAGATAAACCTGCTATAAAGCTTGTAAAGTCCCTTCAGTATTACTTAGAGCATACACTGTTCCTGGCTTACCTCAGTTCCCACACTACAGACCAATGTGATGCAGTACTTGACTCATAGTTTAGATAAATTTAATGTAATTGTTTGATAAAAACAAATTATAAAAAGTTTCCTGGCAGACAGTGACTTGGTATTTAATTTTTACCTCATGCAGCATGGGGAGAATTTGCTTCCTTGTTTATAGACATAACAGAGTAGAACAGGTAAACCTGAGTCTGCTCTTTTGTTTATTCCATTTTTCCCAGTAATTCCTTTACATCTCTACCATAACAAACCATATGCTATTAGAGAATCTCACCAGCCTCAGCACTCAATGAATATCACAACCTATTTCTCACAAATCTGTCAAGATTCCTAAAATTCCATAAATTATAAAAAGTAGCATTTGTATTAAGTCTAATCCCTACATAAATTCTATATTCTTTTTGTGACTTTTAAAATTATTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTATGAGCCAGCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAATAGTCAGTGCTCTTAACCACTGAGCCAGCTCTCCAGCCCTCTTTTTGTGGTTTTTATGATTTATTTGTATATAAGTACACTGTCATCGCTGTCTTCAGACACACAAGAGAGCACTGGATCCCATTAGAGATGGTTGTAAGCCACCATGTCTGTAAGAGCTCTTAACCACTGAGTCATCTCTCCAGCCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAGAGAGAGAGATATGAAACAGGACACCATAGACAAAAAGTTATAGTATCTGAAATATTTGAGCCTAAACTATTAAGAAAATTATTTTATCAATTTGACTTCAATTAAAGATGATTCCCAATAAGGCTAATATGTATATAACAGATTTCAATGTCTCTCATTCTGGAGTACTATACATACACAATTTATTTGGTGCTATGTAGGAACACTGTTCAGAATGTTCAAGAGATGAGGAAAATGAGGTAGTTAGGTGCTAAGTAGTAGGTCTGGAGTTCCAAAGGCCATGGTTTTCTGTTGACATCGATCTCTGCCAGATACTCCCAGGATAACTATTATTCACTACTGAAATAAAGTTACTTTCTGTATTTTGCAGGTTTTGATGGATTTCTCAGTTTTTAATTATGTAATTCGTTTCTGACTATAAACACTGAATTCACTGTTTCTGGCTTTTAGCAGTGTGCATATTAAGTGTCAGTTTAAAATCACCTAACCATCAGCTCATGGAAATATTATTTGTCTTAG
Seq C2 exon
CATATTCAGAAGAAAGCTGCCGAGTGGAAAGTGAAGACAGAGATTATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469:ENSRNOT00000011303:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PD(18.4=82.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]