DreINT0095410 @ danRer10
Intron Retention
Gene
ENSDARG00000068893 | mettl5
Description
methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
Coordinates
chr9:48431579-48431793:+
Coord C1 exon
chr9:48431579-48431661
Coord A exon
chr9:48431662-48431741
Coord C2 exon
chr9:48431742-48431793
Length
80 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
AGACTTGCATTTTCCTGCAGCAC
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTATTGACATGCAGTTCCTGCAGACAGCGATTTCTATGGCAACCAGTGCAGTGTATTCCCTTCACAAGACCTCAACACGAGAT
Seq A exon
GTAAGCTGCCACATTATGTCAAAGTTTAATACCTCTAACTGTTTAAATATATTATTAAGAAGACTTGCATTTTCCTGCAG
Seq C2 exon
CACATTCAGAAGAAAGCAAATGACTGGAAAGTGAAAATGGAAGTCATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068893:ENSDART00000099794:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PD(18.7=82.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAGCGATTTCTATGGC
R:
TGCGATGACTTCCATTTTCACT
Band lengths:
115-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]