GgaINT0048461 @ galGal3
Intron Retention
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20037208-20037670:+
Coord C1 exon
chr7:20037208-20037290
Coord A exon
chr7:20037291-20037618
Coord C2 exon
chr7:20037619-20037670
Length
328 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AGCTCTGTTTAATACTGCAGCAT
3' ss Score
5.11
Exon sequences
Seq C1 exon
GGATGGATATGATCTTTCTGAAAACCGCTTTACAAATGGCAAAAACAGCTGTCTATTCCCTTCACAAGACTTCAACACGGCAG
Seq A exon
GTAGGTCCTTCCTGTTAGTAGGGTAAGCATTAAACAAACAATTAAGTAGCTGGTAATTTGTGACATTGTCTTTAGCTTTGTTGATTTGTTCACATTTCAATGGTTTGTGCCCATTTTGGGTGAATAGTGATATCAAAGACTACTTGTGATGTCAAAGACCACTTGTGATGTCAAAGACCATGTGATGCCTACATGGAGATAAGTACATCTAATGTTATCGGCTGAAAAATAGAGGCATTGGAGACTTCCTAAATTCATACAAGTGTGTTGATATTCATAGAACTCTGTGAAAACCAGCCTTTAAAGGCAGCTCTGTTTAATACTGCAG
Seq C2 exon
CATGTTCAAAAGAAAGCAGATGAATGGAAAGTGAAGATGGAAGTCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676:ENSGALT00000015749:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(18.1=100)
A:
NA
C2:
PF051759=MTS=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]