HsaINT0102223 @ hg19
Intron Retention
Gene
ENSG00000138382 | METTL5
Description
methyltransferase like 5 [Source:HGNC Symbol;Acc:25006]
Coordinates
chr2:170671987-170676153:-
Coord C1 exon
chr2:170676071-170676153
Coord A exon
chr2:170672039-170676070
Coord C2 exon
chr2:170671987-170672038
Length
4032 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
AACATATTATTTATGTTCAGCAT
3' ss Score
4.64
Exon sequences
Seq C1 exon
GGACAGATATGGCTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCCTTACACAAATCCTCAACTAGAGAA
Seq A exon
GTAAGTTCAAATCATCTGATATTCTGTGGCATTGATTTTTAAATTCATGACAGTGTTTTTAGGATTTGCTGTGAATACTAGATACCACAGTATCTATTTCTCCTGACCATTTTGACATGTGAAACTTAAATTTTCCACTTAACCAGCTAGCATCTGATTGGCCTTTTTCCAGGCTATAAGACTTATTTCCTCAAAGATTTTTTTCAGACAGGAACTGTTGCCAGAGGAGAGACTATAACTCAGGAGTAGAAAAGTGTGTTGTAACTAGGATTACTGTATGTTTTGGTTTCTCTGAGTAAGTCTTAGTTGATCCCTTTTGTCCCATTGTCCCGGTGTGGCCTGATGTACTTAAGGGAGGCAGTAAGGCCAGGTTTTCAGAACACTTGAGCCTGGAGCTAAACAGATCTGAGTTCAGAAATCACCTATTCTTACTTTTGCAGCATATAACACATGGAGAGGTGTATAAGTTGTAGTCCAGGAAACTGGGGGAAGGGGCAGTACATTTTTTTAGTGTCAGTATAACACAATAGTTAGGAACAGAGATTCTGAAGCCAGACCAGATTCTCTGGGTTCAGATCCAAGTTCTGCTGCCTCCCAGCTGTTTTCTTGGTCAAGGTAATTGAGTTTCATCATCAAGGTAATTGAGCTTTTGTCATCTATACTATCCTCACCTGTACTCTAAGTGTAAGGGACTGAGAGTACCAATTGTACTTCATAAGAATTGTGAGGATTACATGAGTTAATATTTACAAAGCACTTAGATCAGTGTCTGACATGTGTAATTGCTATGTGTTAGCTATTATTATTTAAATCATACATGTATTCAAAGATTTTAAAGTGCTTTTGTAGGAAAAATACTTAATTCATGTAAATACAGTACGTAAGAACCCAGTTGGAAATAATACATTCTAGTTACATGGTAATGTGATAACCTTTTAAAAAGCATAAAATATAACAGCTAAAAAGAACTATACTGCTAATAATAAGTAGTGGTACATGTAGGCAAGCAACAGGACACAACATAGCTAGTAAATAAATCCTCACTCACTATATATGAAAGCAAACACCAGTAAACATTGGTATCCAAACCTGTGTCCCCAAGAACACCCTCAGGTTTGATGATTCACTAGGAAATCTCACAGGACTCAGCATCTAGTCTTATTCATGGCTATGATGTATTACAGTGAAAGGATATAGAGCAAAATCAGCAAGGAGAAAGGTGCATTAGGCAGAGAATGGGGTAAACCAGGGCCAGGCTTCTGGAGTCTTCTGCCAGTAGAATAACACAGGACACAATTAATTTTCCCAGCATGAATTATTGATAACACATGTGAAACATTGCCAACCAGGGAAGCTCATTAGAGACTCAGTGCCCAGGGCTTTTATTAGGGACTGATCATGTAGGCAATTCCCTTTCTGACACATACCCAAATTCTAGACTCCCAGTAGGAAAACAGGTGTTCAGCATAAACAGTGTTAGGCACAGTCAGTCACTATTATTAAGGGAGTAGGGAGTGGGAGGCTTCCCAAAATCTAAGTTCCCAGTCTCCAGACAAGGGCCAAACTAAGCAGGCCTTTCTAAGGATAAGCAGCCAGGCCTGCTGTGAACTCTTTTCTGCACAGCTTGGCATAACATGAATTTTTTTTTTAATTATACTTTAAGTTCTAGGGTACATGTGCACAACATGCAGGTTACATACGTAGACATGTGCCATGTTGGTTTGCTGCACCCATCAACTTGTCATTTACATTAGGTATTTCTCCTAATGCTATCTCTCCGCCAGCCCCCCACCCCCCAACAGGCCCCCGTGTGTTATGTTCCCCTCCCTGTGTCCATGTGTTCTCGTTGTTCAACTCCCACTTATGAGTGAGAACATGCGGTGTTTGGTTTTCTGTCCTTGTGATAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCCATGAACTCATCCTTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTTATCCAGTCTATTATCGATGGACATTTGAGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAGTAAACATACATGTGCATGTGTCTTTATAGCAGCATGATTTATAACCCTTTGGGTATATACCCAGTCATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCGTTGAAGAATCTCCACACTGTCTTCCACAATGGTTGAACTAATTTACACTCCTAACAGTGTAAAAGCATTCCTATTTCTCCACATCCTCTCCAGCATCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTATGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGACCACTGATGATGAGCATTTTTTCATATGTCTGTTGGCTGCATAAATGTCTTCTTTTGGGAAGTGTCTGTTCATATCTTTTGCCCACTTTTTTGATGGGTTTTTTTTTCTTGTAAATTTGTTTCAGTTGTTTATAGATTCTGGATATTAGCCCTTTGTCAGATGGATAGATTGCAAAAATGTTCTCCCATTCTGTAGGCTGCCTGTTCACTTTCATGATAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTATCAATTTTGGCTTTGTTGCCATTGCTTTTGGTGTTTTGGTCATGAAATCTTTGCCCATGCCTATGTCCTGAATGGTATTGCCTAGGTTTTCTTCTAGAGTTTTTAGGTCTTACATTTAGATTTTTAATCCATCTTGAGTTAATTTTCATGTAAGGTGTAAGGAACGGATCCAGTTTCAGTTTTCTGCATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTTCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCAGATGGTTGTAGATGTGTGGTGTTATTTCTGAGGCCTCTGTTCTGTTCCATTGGTCTATATATCTGTTTTGGTACCAGTACCATGCTATTTTGGTTACTGTAGCTTTGTAGTATAGTTTGAAGTCAGGTAGCATGGTGCTTCCAGCTTTGTTCTTTTTGCTTAGGATTGTCTTGGCTATGTGGGCTCTTTTGGTTCCATATGAAATTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAGTGGTCGCTTGATGGTGATAGCATTGAATCTATAAATTACCTTGGGTAGTATGGCCATTTTCATGATACAGTGCTCTACACTTTCGGAGAAACTTCTCTAGTAACGAACTATAGAAATGATCCCTGAAAGTATAGTCTTGGCATAACATGAATTTTATAAAACTCAGTTTTACTGCATGAACTGAATTCCCCATGTACCTATATCTCTGCCAAATGGTTTCTAGGCTAGCTAGCTGTATATATCAATGAAATAATGCTACAGAAACCATATGAGAACATTACACATCTTTGATAGATTTCTGAAATAGTCATGCATCCTTTAACAACAGGGATATGTTCTGACTAATGCATTCTGAGGTGATTTCATCATTGTGCAAACATAGAGTGGACCACCGAGGCTCTGTGGTTATAGTCTGTTGTTCCTAGGCTACAAACCTGTCAACCTATTACTGTATTGAATACTACAGGCAATTGTAACACAATGGTATTCTTTTGATCTAAACATATATAAACACCAAGAAGGTAATGTGTTGTGCTGTGATGTCAAGATAGCTACATCATTAGGCAATAGCAATTTTTCAGCTCCATTTATAATTTTATGGGACTACCAAAATATATGCAGTCCCTAGATAACCCCAAATGGCATTATGTGGTGCATGAGTAGCTTTCTATCACTTGGATTTATTGTGTGATTTGGTTCAGATTGTTAAATGTATTGAAATTGATTTATTATTTTCAGAATACTATCCATTCAATTGAAATTTTTATAAGGGTCTAGATTCTAATGAAATTTTAAGCTTAAAAACTCAATCTCAAGTATTAGTAAAAAGCAATTTTAAAAAATCATTATTTAAAAATCAGCTCATAACAACATATTATTTATGTTCAG
Seq C2 exon
CATGTTCAAAAGAAAGCTGCAGAATGGAAAATCAAGATAGATATTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138382-METTL5:NM_014168:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063258=PrmA=PD(18.9=37.0)
A:
NA
C2:
PF051759=MTS=PD(15.9=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)