GgaEX0014329 @ galGal3
Exon Skipping
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20036108-20037290:+
Coord C1 exon
chr7:20036108-20036222
Coord A exon
chr7:20036661-20036842
Coord C2 exon
chr7:20037208-20037290
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTAAAAATAGATT
3' ss Score
6.17
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CATGTATGCTGTACACAATTCACAATACTTTTGATGATATTGAAAACAAAACAGTCGCAGATTTAGGATGTGGCTGTGGTATGCTCAGCATTGGAAGTGCAATGTTGGGAGCAGG
Seq A exon
ATTGTGTGTGGGGTTTGACATAGATGCAGAAGCATTGGAAATATTCAACAGCAACCTTGAAGACTTTGAGCTCACAAATGTTGATGTGGTTCAGTGTGATGTCTCCTCTTTACCCGACAGCATGTCAGAGACTTTTGACACAGTTATCATGAACCCTCCTTTTGGTACCAAACATAATAAAG
Seq C2 exon
GGATGGATATGATCTTTCTGAAAACCGCTTTACAAATGGCAAAAACAGCTGTCTATTCCCTTCACAAGACTTCAACACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(25.5=100)
A:
PF051759=MTS=FE(40.9=100)
C2:
PF051759=MTS=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTATGCTGTACACAATTCACA
R:
TGCCGTGTTGAAGTCTTGTGA
Band lengths:
197-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]