RnoEX0054046 @ rn6
Exon Skipping
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56108260-56110514:-
Coord C1 exon
chr3:56110400-56110514
Coord A exon
chr3:56109786-56109967
Coord C2 exon
chr3:56108260-56108342
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTATATTTATAGGTT
3' ss Score
9.84
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CATGCATGCTTTATACAATCCACAATACATACGACGACATTGAGAGTAAAGCAGTTGCAGATCTAGGATGTGGTTGTGGAGTACTCAGTATTGGAGCCGCAATGTTAGGAGCAGG
Seq A exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAAAATGTGGAAGAGTTTGAGTTAACAAATGTCGATATGATTCAGTGTGATGTGTACTCATTATCTAGCAGAATGTCCAAGTTATTTGACACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
Seq C2 exon
GGACAGATATGGCTTTTCTGAAGACTGCTTTGGGAATGGCAAGAACAGCAGTGTATTCTTTACACAAGTCCTCAACTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(30.4=100)
A:
PF051759=MTS=FE(48.8=100)
C2:
PF051759=MTS=PD(18.4=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCATGCTTTATACAATCCACA
R:
TCTCTAGTTGAGGACTTGTGTAAAGA
Band lengths:
197-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]