DreEX0047735 @ danRer10
Exon Skipping
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10843369-10848832:-
Coord C1 exon
chr2:10848606-10848832
Coord A exon
chr2:10847968-10848166
Coord C2 exon
chr2:10843369-10843450
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTGCCCATTTGACAGAGA
3' ss Score
5.03
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCGCGAGCGCGTCCCATAATGCACTCGCCGCTCAGCGGGAAACCAAAATGGCGAGAGCGAGCGATCAAAAGCACCCGTTTACTACAGTCTGAAACACTTCAGGCGTTTGAATCATCTCCTAAAAGCAGCAGCACCACCTCGATTCACAGCGAAGCTCCGGCTGCCCGTTTATGTTGTAGTTCTTTGTGTTTGTGAGGCATTGTAACCCGGGAAAGTGACCGAATGAG
Seq A exon
AGACTCAGCAAGTGCAGATAACCTGGCCGCCCATCAAAATACTCCAAATCGCCAACACAAGTCCCCTGTGTCCTTGCCCCGATTTCCCTTGAAAGATGGGCTGACCGACACGACAAAGCTTGCTGGCAAGTTTGAGGAAGGGCAGGACGTCCTGGCCCGGTGGTCAGATGGCCTCTTTTACCTGGGAACCATCTCCAAG
Seq C2 exon
ATAGATAAACATAAGCATCGCTGCTTTGTGATCTTTGAAGATCAGTCTAAGTCCTGGGTTCTGTGGAAGGACATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.381 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF150571=DUF4537=PU(32.8=28.4)
C2:
PF150571=DUF4537=FE(46.6=100),PF0013017=C1_1=PU(9.6=17.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGAGCGATCAAAAGCA
R:
TCCTTCCACAGAACCCAGGAC
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]