BtaEX0023110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50514788-50561120:-
Coord C1 exon
chr3:50561020-50561120
Coord A exon
chr3:50514989-50515187
Coord C2 exon
chr3:50514788-50514869
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATTATTTATTTCCTAAACAGAGA
3' ss Score
6.76
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
CCTAGTAAGTGCTCGGACTCGCAAGGGAAGCGCCCACGGGGTCGTGATTGGTTGTTTTTTCCTGTATGAAGCGGTTGGCACCACTGAAGTGACCGAATGAG
Seq A exon
AGACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGGATGGACATAAAGTCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq C2 exon
ATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTCTAAATCCTGGGTTCTCTGGAAGGACATTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393-'3-2,'3-0,12-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTAAGTGCTCGGACTCGCA
R:
TTTGAATGTCCTTCCAGAGAACCC
Band lengths:
178-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development