MmuEX0029983 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108073307-108081023:+
Coord C1 exon
chr5:108073307-108073454
Coord A exon
chr5:108080825-108080841
Coord C2 exon
chr5:108080922-108081023
Length
17 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTATTTCCTGAACAGAGA
3' ss Score
6.84
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGCCGAGTGTTTCATCATGGACTAGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAGGAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAG
Seq A exon
AGACTCTACAGGAGCAG
Seq C2 exon
GATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX1-6/8=4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.201 C2=0.145
Domain overlap (PFAM):
C1:
NA
A:
PF150571=DUF4537=PU(31.7=28.4)
C2:
PF150571=DUF4537=PU(31.7=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCACAATAGAGGGATG
R:
ACAAGCCATCTGACCATCTAGC
Band lengths:
118-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types