GgaEX6044240 @ galGal3
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14702573-14713476:-
Coord C1 exon
chr8:14713252-14713476
Coord A exon
chr8:14702814-14703012
Coord C2 exon
chr8:14702573-14702666
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTCTCTTCTTTTAGAGA
3' ss Score
9.1
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCCGCGGGAAACAAAAATGGCGAGGGGCTGCGCTGGAGCCGGGCTGGCCGTGAGGCGGGTCTGACCCCTCCCCCGTCGCCCTTCCTCCGCCGCGCCGCGGGCTCCGCGCTCTGGGGAGCTCGCCGCGCACCGAGGGCCGGCCGCAGCGCGGCGCCGGGGGGAGGCTCCCGAGCTCGCCATTTCCCTGCATGAGGCGGTTGGCACCACTGGAGAGACCGAATGAG
Seq A exon
AGACTCTACAGCGGTGGGTAATTCACTGGTCCATAAGCGGTCTCCTTTACGTCGAAGTCATAAGGCATCAGCATCCTCACCCAAACTATCGTTACGTGATGGACAGAAAGCCAAAAAGCCACTGTGTAAATTTGAAGAAGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq C2 exon
ATAAACAAACTGAAACAGAACTGCTTCATTATATTTGAGGACAGTTCCAAGTCTTGGGTTCTCTGGAAGGACATACAAACAGGCAAGAACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF150571=DUF4537=PU(32.2=28.4)
C2:
PF150571=DUF4537=FE(47.7=100),PF0013017=C1_1=PU(6.2=9.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAAAAATGGCGAGGGGC
R:
TGAAGCAGTTCTGTTTCAGTTTGT
Band lengths:
245-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]