RnoEX6041409 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2685019-2700977:-
Coord C1 exon
chr14:2700740-2700977
Coord A exon
chr14:2685212-2685410
Coord C2 exon
chr14:2685019-2685100
Length
199 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTATTTCCTGAACAGAGA
3' ss Score
7.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAAAATGGCGAAGGGCTGTAGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGAACGCATATTCTCCTCCCCAATCCTCGTCCCCAAGGAATTCAGTGCGTGTGTGTGCGTGAGCGCAGGGTTCCCGCTGGGGCGGGTGCCCAGTGAGTGCCCGGACTCGCGGGGAAGCGCCCACGGGAACGTGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAG
Seq A exon
AGACTCTACAGGAGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTCACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGAACTATCAAAAAG
Seq C2 exon
ATAAACATTTTGAAACAGAGCTGCTTCATCACATTTGAGGACAGTTCTAAGTCCTGGGTTCTCTGGAAGGACATCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-'0-8,'0-5,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.343 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF150571=DUF4537=PU(31.1=28.4)
C2:
PF150571=DUF4537=FE(44.3=100),PF0013017=C1_1=PU(6.0=10.7)
Main Skipping Isoform:
ENSRNOT00000000086fB9076
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTCCCCAATCCTCGTC
R:
TGTCCTTCCAGAGAACCCAGG
Band lengths:
251-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]