DreEX0048529 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42780594-42784677:-
Coord C1 exon
chr2:42784577-42784677
Coord A exon
chr2:42781097-42781221
Coord C2 exon
chr2:42780594-42780708
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTCTGTTTTTCACAGATG
3' ss Score
11.71
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGTGTGAACTGGCCAGTTGATCACTGGCTCGTTGTGGACATACACTCACTCACTTAGAGCTGCTGACGGACACACCATGAGAACGGACACTTTTCTCTACA
Seq A exon
ATGCCCGGTCAGTTTGAGCAGACTGTGGTCCTCAATCAGCTCAGATATTCTGGGATGTTGGAAACAGTGAAAATCAGACGTTCTGGGTTTCCCATCAGGAGGACGTTTAAGGATTTCTGTTCCAG
Seq C2 exon
GTACTATGTGTTGATGAGGGCTTTGGCTTTGTCAGAGGACCTTAAGGGGCGGAGTCTCTTGCTGCTGCAGCTCTATGACAACAGCGGTGCTGAATGGCAGCTGGGAAAAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'24-19,'24-18,25-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCACTGGCTCGTTGTGG
R:
TTTTTCCCAGCTGCCATTCAG
Band lengths:
195-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]