HsaEX6097486 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16711017-16755017:-
Coord C1 exon
chr5:16754937-16755017
Coord A exon
chr5:16711230-16711354
Coord C2 exon
chr5:16711017-16711131
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGCATGGTTTAGATG
3' ss Score
7.22
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
GACTCACTGCATTCCTTAATGGCAACGCTAAGCTCCTCTAATCCTTTCTTTGTTCGCTGTATCAAGCCAAACATGCAGAAG
Seq A exon
ATGCCAGACCAGTTTGACCAGGCGGTTGTGCTGAACCAGCTGCGGTACTCAGGGATGCTGGAGACTGTGAGAATCCGCAAAGCTGGGTATGCGGTCCGAAGACCCTTTCAGGACTTTTACAAAAG
Seq C2 exon
GTATAAAGTGCTGATGAGGAATCTGGCTCTGCCTGAGGACGTCCGAGGGAAGTGCACGAGCCTGCTGCAGCTCTATGATGCCTCCAACAGCGAGTGGCAGCTGGGGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'28-35,'28-34,33-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
PF0006316=Myosin_head=PU(48.8=97.6)
C2:
PF0006316=Myosin_head=FE(45.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACTGCATTCCTTAATGGCA
R:
CTTGGTCTTCCCCAGCTGC
Band lengths:
195-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)