MmuEX6052936 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25744176-25776432:+
Coord C1 exon
chr15:25744176-25744256
Coord A exon
chr15:25776021-25776145
Coord C2 exon
chr15:25776318-25776432
Length
125 bp
Sequences
Splice sites
3' ss Seq
TATCCCACCTCACGGTTTAGATG
3' ss Score
6
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
GACTCCCTGCACTCCTTAATGGCAACACTAAGCTCCTCAAATCCTTTCTTTGTCAGATGCATCAAGCCAAACACACAGAAG
Seq A exon
ATGCCAGACCAGTTTGATCAGGTGGTAGTGCTCAACCAGCTGCGCTACTCGGGGATGCTGGAGACGGTGAGGATTCGGAAAGCAGGGTATGCCGTCAGAAGACCCTTTCAGGACTTTTACAAAAG
Seq C2 exon
GTATAAAGTGCTGATGAGGAACTTGGCCCTGCCTGACGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGGTCTATGACGCTTCTAACAGCGAGTGGCAGCTGGGGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'36-44,'36-43,46-44
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(32.5=100)
A:
PF0006316=Myosin_head=PU(48.8=97.6)
C2:
PF0006316=Myosin_head=FE(44.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCACTCCTTAATGGC
R:
CTTGGTCTTCCCCAGCTGC
Band lengths:
194-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types