GgaEX7002065 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75581314-75605426:+
Coord C1 exon
chr2:75581314-75581394
Coord A exon
chr2:75605033-75605157
Coord C2 exon
chr2:75605312-75605426
Length
125 bp
Sequences
Splice sites
3' ss Seq
CAAATACTTGCTTGTTTCAGATG
3' ss Score
7.39
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAATCACTCCATTCCTTAATGGCAACGCTGAGTTCTTCAAATCCTTTCTTTGTTCGGTGCATCAAACCCAATGTGCAGAAG
Seq A exon
ATGCCAGATCAGTTTGATCAGACAGTGGTGCTCAACCAACTGCGCTACTCTGGGATGCTGGAGACCGTGAGGATTCGGAGGGCTGGCTTCCCAGTCCGAAGGCCCTTCCAAGACTTTTATAAAAG
Seq C2 exon
GTATAAAGTTCTCATGAGAAACTTAACTCTGCCCGAAGACTTAAATGAGAGATGTGCCGTCCTCCTTCGTCTGTATGACAACACAAGCACTGAATGGCAGCTTGGAAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'34-33,'34-32,37-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTAATGGCAACGCTGAGT
R:
TTCCAAGCTGCCATTCAGTGC
Band lengths:
178-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]