RnoEX6009020 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78005741-78034419:+
Coord C1 exon
chr2:78005741-78005821
Coord A exon
chr2:78034048-78034172
Coord C2 exon
chr2:78034305-78034419
Length
125 bp
Sequences
Splice sites
3' ss Seq
TACCCAATCTCACGGTTTAGATG
3' ss Score
5.78
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACTCCCTGCACTCCTTAATGGCAACACTAAGCTCCTCGAATCCCTTCTTTGTCAGATGCATCAAGCCAAACACGCAGAAG
Seq A exon
ATGCCAGACCAGTTTGATCAGGCCGTCGTGCTCAACCAGCTGCGCTACTCTGGGATGCTGGAGACGGTGAGGATTCGAAAGGCAGGATATGCAGTCCGAAGACCCTTTCAGGATTTTTACAAAAG
Seq C2 exon
ATATAAAGTGCTGATGAGGGACTTGGCTCTGCCTGAGGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGTTCTATGATGCTTCTAACAGCGAGTGGCAACTGGGGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'28-32,'28-31,37-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
PF0006316=Myosin_head=FE(9.9=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCACTCCTTAATGGC
R:
CTTGGTCTTCCCCAGTTGCC
Band lengths:
194-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]