DreEX0050050 @ danRer10
Exon Skipping
Gene
ENSDARG00000021200 | nebl
Description
nebulette [Source:ZFIN;Acc:ZDB-GENE-050320-151]
Coordinates
chr2:21423655-21424633:-
Coord C1 exon
chr2:21424283-21424633
Coord A exon
chr2:21424075-21424169
Coord C2 exon
chr2:21423655-21423739
Length
95 bp
Sequences
Splice sites
3' ss Seq
AAGCTTTCACTGTTTTACAGTAT
3' ss Score
5.22
5' ss Seq
CGCGTATGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CGTCTACAGGACCGCCAGTTCCCCGTGGTCATTGTTTGAAGGCTCCTCCAACAGTCTCAGTGGGAGATGTTTGTTCAAATCTCACGCATCTTTGCTCCAGTTTCCTCACTGCGAGAGCAGCCGCACGCTGATAAACACGCGCGAATTTAAAGCTCTGCGACATAAACTCGCCACATGCTGCAACAAATCTGACATACCTTTGAAATTAAGCAACAGCTTCTGGATTATCGGAGTTGTCGGAGAAGTTATGCTATTTTCCCAGACCGTCGCAACGGCTTCAAAATGAACCCTCATTGCGCGCGCTGTGGAAAAATCGTCTACGCAACAGAGAAAGTGAACTGCCTGGATAAG
Seq A exon
TATTGGCACAAAGGATGCTTCCATTGTGAGGTGTGTAAAATGACTCTCAACATGAACAACTACAAGGGATATGAGAAGAAGCCCTACTGCAACGC
Seq C2 exon
GCACTACCCAAAACAGACCTTTACTATAGTGGCAGACACTCCTGAAAACCTTCGACTGAGACAGCAAAGTGAGCTCCAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021200-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCCCAGACCGTCGCAAC
R:
GGAGCTCACTTTGCTGTCTCA
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]