GgaEX6018704 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18006660-18079353:+
Coord C1 exon
chr2:18006660-18006889
Coord A exon
chr2:18007795-18007889
Coord C2 exon
chr2:18079269-18079353
Length
95 bp
Sequences
Splice sites
3' ss Seq
TACTTTACATTTCTTTACAGTAT
3' ss Score
7.04
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCCGCCGCCGATGACCTCTTCGCCCGCCGGCAGCCGCTGAGGAGCCCCGGCGTCCCCACGCGGGCAGGGGATGCTCCATCGGCCGCCCGCAGCCCCGTGCAGCCTGCCCGCCGCGCAGCAGCCTCGGCCGCAGGGAGCCGCAGCCCGGGAGGAGCCGCACCATGAACCCCCAGTGCGCCCGCTGTGGGAAAGTGGTCTATCCCACCGAGAAAGTCAACTGCCTGGACAAG
Seq A exon
TATTGGCATAAAGGATGTTTCCACTGTGAAGTTTGCAAAATGGCTCTGAACATGAATAACTACAAAGGATATGAAAAGAAACCTTATTGCAATGC
Seq C2 exon
ACATTACCCAAAGCAGTCCTTCACTACAGTGGCTGATACTCCAGAAAATCTACGTCTGAAGCAACAAAGTGAATTGCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'1-6,'1-0,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.259
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGCCGCACCATGAA
R:
TGACTCTGCAATTCACTTTGTTGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]