MmuEX6099108 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17511720-17652670:-
Coord C1 exon
chr2:17652420-17652670
Coord A exon
chr2:17650996-17651090
Coord C2 exon
chr2:17511720-17511804
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTCCTTCTCAGTAT
3' ss Score
9.91
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
CTAGTGCCAGCGTCGCCGAGCGCGGCCTGCCCCCTTGCACCTCTCCAGGCCAGTTTGACAGCGCCTGAAGCCCTTCTCCCTGCCCCGAGGTGGCGCGGGGCTCTTCGGGGGATGTCACAGCGGCTCCTCGGAGCCCCTAGTTCCCGCTGCAGCAACAGCCACCGCCCGCGGGAACCGCGACAATGAATCCCCAGTGCGCCCGCTGCGGAAAAGTGGTGTATCCCACAGAGAAAGTCAACTGTCTAGATAAG
Seq A exon
TATTGGCATAAAGGATGTTTCCACTGCGAGGTCTGCAAGATGGCTCTCAACATGAACAACTACAAAGGCTATGAAAAGAAGCCCTATTGCAATGC
Seq C2 exon
ACACTACCCAAAGCAGTCCTTCACCACAGTGGCGGATACACCTGAAAACCTTCGCCTGAAGCAGCAAAGTGAACTGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.322
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCGGAGCCCCTAGTTC
R:
GGTTTTCAGGTGTATCCGCCA
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: