DreEX0053385 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51067727-51069598:-
Coord C1 exon
chr17:51069394-51069598
Coord A exon
chr17:51068973-51069149
Coord C2 exon
chr17:51067727-51067827
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACATGTTACTGTTCACATAGTGC
3' ss Score
4
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CTGGACGGCTGGCGAGTGGAGCCCATGTCCGGTGACCTGTGGTGGGGGTCTTCAGGCCAGGAGAGTGGAGTGTATGTCACATGACTCCACAGGATCACGATTGGTTGAGGACTCTCAGTGTACTGCTTACACTCCCAGACCTCTCAGCCAGCAGAACTGCAACATGCAGAAATGTGCTCAGTACAGCATTTACAGCTGGAGCCAG
Seq A exon
TGCTCTGTGACATGCGGCTCTGGGAAACAGACGCGAGATGTGGTGTGCATTGGTTCAGACGGAGCTTCTGTGGAGGATTACGCATGTGGGAACCAACCAAAGCCCCCCAGAGAACAGATCTGCGAGATGCCCATGTGCAGGAGCCCCATTGCCTGGCATATAGGAGACTGGGGCCTG
Seq C2 exon
TCAACCATCCTAGGCTGGTTTAAGCTGGATTTTTCAGCAGGGATAATTAATACTGCTAATAATAATAACATTATACAGATGCAGATCATCATGAATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'18-18,'18-17,19-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=NA
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=84.1),PF0009014=TSP_1=PU(9.6=7.2)
A:
PF0009014=TSP_1=PD(86.5=76.3),PF0009014=TSP_1=PU(11.3=10.2)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAGCCCATGTCCGG
R:
AGCAGTATTAATTATCCCTGCTGA
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]