GgaEX1041973 @ galGal4
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25602828-25606366:-
Coord C1 exon
chr5:25606159-25606366
Coord A exon
chr5:25604291-25604467
Coord C2 exon
chr5:25602828-25602984
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGCCCTGTTCCACAGTGC
3' ss Score
9.01
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTGGAAAACAGGGGAGTGGGGACCCTGCTCAGCTACCTGTGGTGGAGGCACCCAGACTCGCTCTGTTTACTGTGTAGCATTTGATGGTCAGAACTCCCAAGGTGTTGTGGACAACGCTGAGTGTATGGCCTTTGCACAGCAGCCTCACAGCAGTCAGCCCTGCAACAGGAGACAGTGTGCAACCTGGAGCACAGGGCCCTGGTCAGAG
Seq A exon
TGCTCAGCCAGCTGTGGGGAAGGCGTCCAGACCCGGACTGTCACCTGCAGAACGCAGCATGGCTCTCAGGCTCAGGACTTTGCTTGCTTAATGGAGCCAAAGCCACCAGCCACGCAGCCCTGCCTTAAGGAGAACTGCATCCAAGAAGTCGGTTGGCACGTTGGAGACTGGGGCCTG
Seq C2 exon
TGTTCAAAGAGCTGCAATTCAGGCATCCGGACACGCCAAGTTATCTGCGCTGATGGTGACTCCAAATTCTACAGTGCTGATATATGCAAAGCCATCCAACCACAGAAGCCAGCCACACTGGGTAGCTGCAACGTGCAGCCTTGCTACCTGCCACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
A:
PF0009014=TSP_1=PD(83.3=76.3),PF0009014=TSP_1=PU(10.9=10.2)
C2:
PF0009014=TSP_1=PD(85.5=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAGAACTCCCAAGGTGT
R:
GTTGCAGCTACCCAGTGTGG
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]