MmuEX6082006 @ mm10
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83776354-83777495:+
Coord C1 exon
chr12:83776354-83776561
Coord A exon
chr12:83777020-83777202
Coord C2 exon
chr12:83777354-83777495
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTGATATCTGTCCTTACAGTGC
3' ss Score
7.43
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CTGGAAGGTAGGCCCATGGACGCCCTGCTCGGTCTCCTGCGGGGGTGGAGTCCAGTCTCGCTCTGTCTACTGCATATCCTCAGATGGGACTGGTGGCCAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGTTGGGAAACCCCCTACCACACAGGCTTGCAACCTGCAGCACTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAG
Seq A exon
TGCTCAGTTACATGCGGGACTGGCATCAGGAAGAGGAGTGTCACCTGCCGAGGGGACGAGGGGTCTCCGGTCCATGCTGCAGCGTGCTTGTTGAAGGACCAGCCAACCCTCACGGAGCCCTGTGTACAAGAGGCCTGCCCTGTGTTCCGTGGCCAGGCCTGGCATGTTGGCTCATGGAGTCTA
Seq C2 exon
TGCTCTAAAAGCTGTGGTTCCGGCATTCGGAGAAGGCAGGTTGTTTGTACCATCGGGCCGCCTGGTCGTTGTGTGGACCTGCAGTCGTCCAAGCCTGCCGAGATGGAAGCCTGCAACAGACAGCCCTGCCATCTTCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'12-22,'12-13,16-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(13.0=10.0)
A:
PF0009014=TSP_1=PD(83.3=73.8),PF0009014=TSP_1=PU(12.0=9.8)
C2:
PF0009014=TSP_1=PD(84.0=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCAGATGGGACTGGTGG
R:
CTGTCTGTTGCAGGCTTCCAT
Band lengths:
256-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types