RnoEX6029289 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107260343-107261675:+
Coord C1 exon
chr6:107260343-107260550
Coord A exon
chr6:107261241-107261423
Coord C2 exon
chr6:107261534-107261675
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTGATAGCTGTCCTTACAGTGC
3' ss Score
2.79
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CTGGAAAGTAGGACCATGGACGCCCTGCTCAGTCTCCTGTGGGGGTGGATTCCAGTCTCGCTCTGTCTACTGCGTGTCCTCAGATGGCACTGGTGGCCAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGCTGGGAAACCCCCTACCACACAGGCATGCAACCTGCAGCGCTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAG
Seq A exon
TGCTCAGTTACATGTGGAGCTGGCATCAGGAAGCGGAGTGTCACATGCCGAGGGGACGAAGACTCTCTGGTCCACCCCGCAGCATGCTCCTTGAAGGACCAGCCAACCCTCACAGAGCCCTGTGTGCGAGAGGCCTGTCCTGGGTTCCGTGGCCAGGCCTGGCATGTCGGCTCGTGGAGTCTA
Seq C2 exon
TGCTCTAAAAGCTGTGGTTCCGGCATTCGGAGACGGCAGGTCGTTTGTACCATTGGGCCGCCCGGTCGCTGTGTGGACCTGCAGTCGTCCAAACCTGCAGAGGTAGAAGCCTGCAACAGACAACCCTGCCATCTCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'17-17,'17-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(13.0=10.0)
A:
PF0009014=TSP_1=PD(83.3=73.8),PF0009014=TSP_1=PU(12.0=9.8)
C2:
PF0009014=TSP_1=PD(84.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTAGGACCATGGACGCC
R:
GTACAAACGACCTGCCGTCTC
Band lengths:
255-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]