DreEX0053392 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51069394-51081991:-
Coord C1 exon
chr17:51081865-51081991
Coord A exon
chr17:51080927-51080998
Coord C2 exon
chr17:51069394-51069598
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCCTGTTCTGTAAGGAT
3' ss Score
4.82
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATACCAGTCCCGTCTGGTCTTCTGCACGTTTGAAGATGAGGCGTACTCTGATTATCTGTGTGCGTCGCTCCCTCGACCTCTCAGTAACCGCACATGCAACGAGCAGCAGTGTCCACAAACCCGCAG
Seq A exon
GATGGCGTATGTGTACGAGGCGCAGTTGTGGAGGCCCACGGAAACACCACGAGTCTATGTACAAGTGTACAG
Seq C2 exon
CTGGACGGCTGGCGAGTGGAGCCCATGTCCGGTGACCTGTGGTGGGGGTCTTCAGGCCAGGAGAGTGGAGTGTATGTCACATGACTCCACAGGATCACGATTGGTTGAGGACTCTCAGTGTACTGCTTACACTCCCAGACCTCTCAGCCAGCAGAACTGCAACATGCAGAAATGTGCTCAGTACAGCATTTACAGCTGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(71.2=86.0)
A:
NO
C2:
PF0009014=TSP_1=WD(100=84.1),PF0009014=TSP_1=PU(9.6=7.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGTTTGAAGATGAGGCG
R:
ATACACTCCACTCTCCTGGCC
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]