HsaEX0045433 @ hg38
Exon Skipping
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr14:73252649-73253961:+
Coord C1 exon
chr14:73252649-73252775
Coord A exon
chr14:73253161-73253226
Coord C2 exon
chr14:73253754-73253961
Length
66 bp
Sequences
Splice sites
3' ss Seq
GGCTTTGTTCGTGCACAAAGGAC
3' ss Score
4.59
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GTCACCAGTCCCGCCTGGTGTTCTGCACCATCGACCATGAGGCCTACCCCGACCACATGTGCCAGCGCCAGCCACGGCCAGCTGACCGGCGTTCCTGCAATCTTCACCCTTGCCCGGAGACCAAGCG
Seq A exon
GACCTCTTACCTGCACCGGCCTGGAGCGTGGCGCCTTGCTGGGGCCCAGCGAGTGTGTGGGAACAG
Seq C2 exon
CTGGAAGGCAGGGCCATGGGCACCCTGCTCAGCCTCCTGTGGAGGAGGCTCCCAGTCCCGCTCCGTGTACTGCATCTCGTCTGACGGGGCCGGCATCCAGGAGGCCGTGGAGGAGGCTGAGTGTGCCGGGCTGCCTGGGAAGCCCCCTGCCATTCAGGCCTGTAACCTGCAGCGCTGTGCAGCCTGGAGCCCGGAGCCCTGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767_MULTIEX4-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(69.8=86.0)
A:
NO
C2:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(14.5=11.4)
Main Inclusion Isoform:
ENST00000340738fB4962
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGACCATGAGGCCTAC
R:
AGACGAGATGCAGTACACGGA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development