RnoEX0063242 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107259322-107260550:+
Coord C1 exon
chr6:107259322-107259448
Coord A exon
chr6:107259809-107259874
Coord C2 exon
chr6:107260343-107260550
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGTTCGTGTACAAAGGAT
3' ss Score
7.34
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCACCAGTCCCGCCTGGTATTCTGCACCATCGACAACGAGGCCTATCCGGACCACATGTGCCAACACCAGCCTCGGCCAGCCCACCGACGTTCATGTAACACTCACCCTTGTCCAAAGACCAAGCG
Seq A exon
GATCTCTTTCCTGCACCGGCCTGGAGCGTGGCGCTATGGTGGGGCCCAGCATGTGTGTGGGAACAG
Seq C2 exon
CTGGAAAGTAGGACCATGGACGCCCTGCTCAGTCTCCTGTGGGGGTGGATTCCAGTCTCGCTCTGTCTACTGCGTGTCCTCAGATGGCACTGGTGGCCAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGCTGGGAAACCCCCTACCACACAGGCATGCAACCTGCAGCGCTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=82.9),PF0009014=TSP_1=PU(13.0=10.0)
Main Inclusion Isoform:
ENSRNOT00000012757fB10281
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTATTCTGCACCATCG
R:
ACAGAGCGAGACTGGAATCCA
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]