GgaEX0013681 @ galGal4
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25606159-25609171:-
Coord C1 exon
chr5:25609045-25609171
Coord A exon
chr5:25608296-25608361
Coord C2 exon
chr5:25606159-25606366
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTCTGTGTGTAAAGGAC
3' ss Score
5.78
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCTTCCAAACCCGCTTGGTGTTTTGTACCATAGACAATGAAATTTATCCAGACTATATGTGCAGGAACAAACCACAACCAGACAATAACCGGACATGTGGCCATCAGACTTGTCCCCAGACAAAACG
Seq A exon
GACTTCTTACATCTTTCCGCCACGAGCTTGGAGCCACGGTGGAGCACGAAACTCTCAGATGAAGAG
Seq C2 exon
GTGGAAAACAGGGGAGTGGGGACCCTGCTCAGCTACCTGTGGTGGAGGCACCCAGACTCGCTCTGTTTACTGTGTAGCATTTGATGGTCAGAACTCCCAAGGTGTTGTGGACAACGCTGAGTGTATGGCCTTTGCACAGCAGCCTCACAGCAGTCAGCCCTGCAACAGGAGACAGTGTGCAACCTGGAGCACAGGGCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(71.2=86.0)
A:
NO
C2:
PF0009014=TSP_1=WD(100=84.3),PF0009014=TSP_1=PU(13.0=10.0)
Main Inclusion Isoform:
ENSGALT00000015156fB1571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAACCGGACATGTGGCC
R:
AAGGCCATACACTCAGCGTTG
Band lengths:
178-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]