DreEX0053710 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14932641-14935458:-
Coord C1 exon
chr25:14935346-14935458
Coord A exon
chr25:14935057-14935198
Coord C2 exon
chr25:14932641-14933678
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTACCCTCTTCACAGCCC
3' ss Score
10.64
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
TATCCTTTACGTCAGGCTCCATGTTGGGCAGATCAGACACAGCTCTTACGAACACATACAGCGCCCTGCCACCAATGCCAAGCTTCACCATGGCCAACAACCTTCCTATGCAA
Seq A exon
CCCAGCCAGACCTCATCCTACTCCTGCATGTTGCCCACTAGTCCTTCAGTAAACGGGCGGAGCTATGACACATACACACCCCCGCACATGCAGGCGCATATGAACAGCCAATCAATGGCCGCCTCGGGCACAACCTCAACGG
Seq C2 exon
GTTTAATCTCACCTGGAGTGTCTGTACCCGTTCAAGTGCCAGGCAGTGAACCAGACATGTCCCAATACTGGCCCAGACTACAGTGAGAACGCGACGCACAAGAACAAAAAAGGAAATCAGAGGAGAGAAAAAAAAAAAAAGAGAAGCTCCTTCACCTCCTGATGTCTCTCGGCTACAAGACAGGGGTGTTCAGCAGTATTTCACCACAGAAGGAAAGGAGGAGACTCTAAAGGACCTCTTTTTTTGTACGGGGATAGTGCCACTTCTCTATCATTCTTTGGACACAAAGACTTGAAGAATAAAAGAGAACAGACTTCTGTAAAGTGCCCGGTATTATATCGTAAAAAAATCTGTTTTTCAGTTTCCAACCTAAGTCATTTTGATGTATTTGTACATGTAATGGCCAATTGTATGTTATGACAAAAAAAGGAAAAAAAAATTTTTTTTTTTGAACAACCGTGGATGGACTGTCAGTAGACCATATTGATGACTCATCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'27-26,'27-24,28-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGAACACATACAGCGCCC
R:
CCCTGTCTTGTAGCCGAGAGA
Band lengths:
253-395
Functional annotations
There are 1 annotated functions for this event
PMID: 10329718
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001441; ELM sequence: GLISPGV; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]