RnoEX0063602 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95724224-95728382:+
Coord C1 exon
chr3:95724224-95724339
Coord A exon
chr3:95726732-95726882
Coord C2 exon
chr3:95727579-95728382
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTCTCCTGGCAGCCC
3' ss Score
10.36
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTCCTCCTTTACATCGGGTTCCATGTTGGGCCGCACAGACACCGCCCTCACCAACACGTACAGTGCTTTGCCGCCGATGCCCAGCTTCACCATGGCAAATAACCTGCCTATGCAA
Seq A exon
CCCCCAGTCCCCAGTCAGACCTCCTCGTACTCCTGCATGCTGCCCACCAGCCCTTCAGTGAATGGGCGGAGTTATGATACCTACACCCCTCCGCACATGCAAACACACATGAACAGTCAGCCCATGGGCACCTCGGGAACCACTTCAACAG
Seq C2 exon
GACTCATTTCACCTGGAGTGTCAGTTCCCGTCCAAGTTCCCGGAAGTGAACCTGACATGTCTCAGTACTGGCCTCGATTACAGTAAAGAGAGAGAAAGAGAGAGAATGTGATCGAGAGGGGGATTGTGTTCACTCAGCCAATGACTATGTGGACACAGCGGTTGGGTATTCAGGAAAGAAAGAGAAATGGCTGTTAGAAGCACTTCACTTTACAACTGTGTCCTATACTGGAGCCCGGGAATGGACTAGAAACCAGGACCTTTGCGTACAGAAGGCACGGTATCAGTTGGAACAAATCTTCATTTTGGTATCCAAACTTTTATTCATTTTGGTGTATTATTTGTAAATGGGCATTTGTATGTTATAATGAAGAAAAGAACAACACAGGCTGTTGGATCTTGGATCTGTGTTGGCTCATGTGGTTGTTTAAAGGAAACCATGATCGACAAGATTTGCCATGGATTTAAGAGTTTTATCAAGATATATCGAATACTTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCGGGTTCCATGTTGGG
R:
GCTGAGTGAACACAATCCCCC
Band lengths:
244-395
Functional annotations
There are 1 annotated functions for this event
PMID: 10329718
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI0... [Show more]
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]