MmuEX0033800 @ mm10
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105692737-105697364:+
Coord C1 exon
chr2:105692737-105692852
Coord A exon
chr2:105695306-105695456
Coord C2 exon
chr2:105696270-105697364
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTTCTTCTGGCAGCCC
3' ss Score
8.94
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTCCTCCTTCACATCAGGTTCCATGTTGGGCCGAACAGACACCGCCCTCACCAACACGTACAGTGCTTTGCCACCCATGCCCAGCTTCACCATGGCAAACAACCTGCCTATGCAA
Seq A exon
CCCCCAGTCCCCAGTCAGACCTCCTCATACTCGTGCATGCTGCCCACCAGCCCGTCAGTGAATGGGCGGAGTTATGATACCTACACCCCTCCGCACATGCAAACACACATGAACAGTCAGCCCATGGGCACCTCGGGGACCACTTCAACAG
Seq C2 exon
GACTCATTTCACCTGGAGTGTCAGTTCCCGTCCAAGTTCCCGGGAGTGAACCTGACATGTCTCAGTACTGGCCTCGATTACAGTAAAGAGAGAAGGAGAGAGCATGTGATCGAGAGAGGAAATTGTGTTCACTCTGCCAATGACTATGTGGACACAGCAGTTGGGTATTCAGGAAAGAAAGAGAAATGGCGGTTAGAAGCACTTCACTTTGTAACTGTCCTGAACTGGAGCCCGGGAATGGACTAGAACCAAGGACCTTTGCGTACAGAAGGCACGGTATCAGTTGGAACAAATCTTCATTTTGGTATCCAAACTTTTATTCATTTTGGTGTATTATTTGTAAATGGGCATTGGTATGTTATAATGAAGAAAAGAACAACACAGGCTGTTGGATCGCGGATCTGTGTTGCTCATGTGGTTGTTTAAAGGAAACCATGATCGACAAGATTTGCCATGGATTTAAGAGTTTTATCAAGATATATCAAATACTTCTCCCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTCACCATGGCAAACA
R:
GTGAAGTGCTTCTAACCGCCA
Band lengths:
242-393
Functional annotations
There are 1 annotated functions for this event
PMID: 10329718
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001441; ELM sequence: GLISPGV; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types