DreEX0053722 @ danRer10
Exon Skipping
Gene
ENSDARG00000045936 | pax6b
Description
paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
Coordinates
chr7:15639580-15648344:+
Coord C1 exon
chr7:15639580-15639692
Coord A exon
chr7:15642534-15642675
Coord C2 exon
chr7:15644861-15648344
Length
142 bp
Sequences
Splice sites
3' ss Seq
TATATTCTTGTTTCTTATAGCCA
3' ss Score
7.88
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGTCCTTCACGACAGGCTCAATGCTGGGCCGACCAGACACAGCTCTGACCAACACATACACGGGTTTACCCCCAATGCCCAGCTTCACTATGGCCAACAACCTGCCTATGCAA
Seq A exon
CCAAGCCAGACATCTTCCTATTCCTGCATGCTGCCCAGCAGTCCGTCAGTGAACGGGCGAAGCTTCGACACTTACACCCCCCCTCACATGCAGGCACACATGAACAGCCAAACTATGGCCACTTCTGGCACCGCTTCCACAG
Seq C2 exon
GACTCATCTCTCCTGGAGTGTCTGTCCCTGTCCAAGTCCCCGGAACTGAGCCTGACATGTCTCAATACTGGTCAAGATTACAGTAAAGAAAAGAGCTACTTCGCCCTTTGACTTGAGCGCACAGAGACTGAGCGAGAAGCTGGACGCGTCTGCACAGTATTTCCGCACACAGACTCAAACAAACTGTCATGAGGATGAGGCGCGAGCTCTTTTCACACTCCCAGAACTTCTAAAAAAAAAAAGAAAAAATGGAGAGACTTTAATGGAACAAAAACAAGCGACCTCTGCGACATCCACATTTTTCCAACTCATTTTTTTTTGTACTTGTACATCAGCATTTATATGTAAAGAGAGCAGCCCATAAAATACACTGGTGTCCTCTAATATTGGCACCCTTGGTAAATATGAGCAGTCTATGATAAATAGTCTTTGTTGTTAAACCTTTTGTCCATTTTGTTCAAAATATGAACAAAAAATATCTCATTGTAAACCGTTTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045936_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACACAGCTCTGACCAAC
R:
TGTGTGCGGAAATACTGTGCA
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]