DreEX0055919 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:12035016-12061312:-
Coord C1 exon
chr6:12060827-12061312
Coord A exon
chr6:12040842-12040978
Coord C2 exon
chr6:12035016-12035128
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTGATTTGCGCAGGGG
3' ss Score
6.87
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCGTACAAAATATTTATGATGCGCCGGCGAGTCTTCCCCAAAGTTGTGTGGACTTTGTGTAACCCCAATCCTCTTAAATCCGACCAATAGAAGACTAAACGCATACATCAACCAATTCAAAGTAACGAATTTGTGGGCGTTTATGCGCACTACGAGCAGATGGTCACTCATGTGACCATTTAAGGGGTTGTTGTTTTCGCGGTGTAAACGTATTTTCCACGGAATTCGACGGGAACTCCGTTTTTTCCGAATGAACTCCCGTTCGACTACATGGCAACACATTTAAATGCCCTGAAACGGCATCTCTCTATGTGGAGCGTCTACGTCACGCGCTCTGACCCTCTTGCCCATGGAAGCGCGCGAGACCAAGCCGGAGCCGCCCGTTCATCGCCTGAAAACACCTTTGGAAAGAATGTCATCCCGGGTTTCTCTTACCAATGGATTTAATCGTCTCCACGACTAATTCGCATTTCGGCGTTTTTGCG
Seq A exon
GGGAAATGCCTACTCCAAGGCAAAGCCCTGTGGAGGAAAGGGAGGTGTTGAGCGGCGAGGGAAGATCCAACAACAACAACATGGCGACTGATACCACCACCACCACCACCAACCTGCTGGCCTCGGTTAAAGAGCAG
Seq C2 exon
GAGCTCCAATTTGAACGGCTTACCAGAGAACTCGAGGAGGAGAGACAGATTGTAGCCAATCAGTTGGAGCGATGCAGGTTGGGGGCGGAGTCTCCAGGTGCTGCAAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGTGGAGCGTCTACGTCA
R:
CCTGCATCGCTCCAACTGATT
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]