HsaEX0047795 @ hg38
Exon Skipping
Gene
ENSG00000144283 | PKP4
Description
plakophilin 4 [Source:HGNC Symbol;Acc:HGNC:9026]
Coordinates
chr2:158456964-158577383:+
Coord C1 exon
chr2:158456964-158457218
Coord A exon
chr2:158533180-158533316
Coord C2 exon
chr2:158577271-158577383
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTGCTTGATTGCAGGAG
3' ss Score
7.93
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TCCGGGGCTGAGTCCGCGTCGACGCCGGCCGCGGAGGCGGCACCATGGGCAAGGGGTAGAGGGGCAAGTTGGCCACCGCCGCCGCCGGGGGTGGTGGGAGAGCCGCTCCGGGGGCGGGGGCCGGTGGGGGAGGGAGGGGCGGGCAGCCGCGCCGCCGCGGCACTTTTTTAATTTTTTCGGGTGCCGCAGCGGCGACCCCTCGGCGCCGATGTCCCTGATCCCTGGAGCGACGACGGCCGCTGCCTAAGCTGGAAA
Seq A exon
GAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAG
Seq C2 exon
GAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144283-'0-16,'0-4,19-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.982 C2=0.656
Domain overlap (PFAM):
C1:
NA
A:
PF117563=YgbA_NO=PU(23.5=36.4)
C2:
PF117563=YgbA_NO=FE(54.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGTAGAGGGGCAAGTTG
R:
TTCCACTTCCAGTTCTCGGGT
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development