MmuEX0035459 @ mm10
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59160850-59266500:+
Coord C1 exon
chr2:59160850-59161128
Coord A exon
chr2:59214678-59214814
Coord C2 exon
chr2:59266388-59266500
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTGCTTGATTGCAGGAG
3' ss Score
7.93
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGGGCGGCGGCCTCTGAGCAGTCTAGAGGGCTCCGGGGCTGAGTGCGCGTGGACGCCGGCCGCGGCGGCGGCACTATGGGCACGGGGTAGAGGCGAGCTGCCGCCGCCACCGGGGTGGTGGGAGAGCCTCTTCGGGGGAGGGGGCGGGAGGGGAGGGAGGGGAGGGCAGCGGCGAGGCTGCCGCACTTCGGCCAGTTTGCTCCGGTGCCGCAGCGGCGACCCTTCGGCGTGGATGTCCCTGGTCCCTGGAGCGACGACGGCCTCCGCCTGAGCTGGAAA
Seq A exon
GAGGAATGCCCGCCCCTGAACAGGGCTCACTGGTGGAGGAGGGGCAACCACAGACCCACCAGGAAGCTGTCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAG
Seq C2 exon
GAGCTTCAGTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCGCCAAGCATCGCCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-'0-15,'0-6,7-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.997 C2=0.921
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTATGGGCACGGGGTAGAG
R:
TTCCACTTCCAGTTCTCGGGT
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types