DreEX0056310 @ danRer10
Exon Skipping
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4884415-4900944:+
Coord C1 exon
chr12:4884415-4885605
Coord A exon
chr12:4893139-4893227
Coord C2 exon
chr12:4900700-4900944
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGGCTGTTTTGCAGTGT
3' ss Score
8.1
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATAGTGTAAAAACAGTAATTATACCGAATATTCTTCATAATACTTGTTAAATTACCTCTTAAATTGCATTTTATGAACGTCTACCCCAACCTCAATCCTCATAATAATGTACAAATATTAATTACTCTTGTACTGTGTCACAAAAATTATGCTATTTTGATGTGAGTATCCGCAGTTGTATCCCGTTTAGACTTTACTCTGTGCTGATGGCTGTCCCCCGTCTCAGTACAATCAATGTTGCGCACGGCTTGCGCAATCGCACAGCTCGTCAACAGGAACACGATGAACCCTGCGTTCATTTCCCATGCTGCACTTCGCGTCAGCTGATCTGCTCACATCTGTACCTCCTTTGCGCTTTTGTTTTTTCCTGGATCAGCAAACGAGTGACAGATATCACACGACTCGAGCTCACGTCGCTTCAGTACGAGGAAAGAAAACACAAGAGGCACGATGAGCGCGTAGGAGTTCAGAGGAACCCACGACGCATCGACGCAGAACAG
Seq A exon
TGTGTGAAGTGGAAATAATCACAGCTAGAGGAGCCATGCTGGCCACCCAAACACCTGAGAGCGGCCCAGACGCTAAAGATGTTAAACAG
Seq C2 exon
TGGATCAAGGGCAAGATCGCACATACATTAAAAGCCCTGCAGAAGCGCTACATCACCACAGACACGGCGGTCACCAGTGAGGATCTAGAAGCAAACCTGCTGTGCTGTGCTTTGGAGGCGGTTTTCATCCATGGAATCAAGAGTAAGTTCATCCGATCTGATGGAGGTCAAGTGCGCAAAGGAGGATCTCGAGGAGCGCTGCCTCAGCCAGTCTTCTGGGCTCTGTTGAAGACTGTCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.611 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0275914=RUN=PU(36.8=59.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCGCGTAGGAGTTCAG
R:
ATGAAAACCGCCTCCAAAGCA
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]