MmuEX6090283 @ mm9
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103258341-103273978:-
Coord C1 exon
chr11:103273907-103273978
Coord A exon
chr11:103265139-103265224
Coord C2 exon
chr11:103258341-103258588
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTGTTTCTTCAGGTG
3' ss Score
11.81
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGCAGCTTCTGCTCGGAACCGAGGGGGGTCTCGCTTCGCCCGGAGCGCCGCCACCTGCTCCTGATCCCTTCG
Seq A exon
GTGTCATGTGAGTCTCCCTCAGAGCTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGTGCTGCCATCCAG
Seq C2 exon
GTCATCAAGAAGAAGCTCGTGGGATCCGTGAAGGCTCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCCAACACCATGTGCAGTGCCCTGGAGGCTGTGTTCATCCACGGCCTGCATGCCAAGCACATCCGCGCCGAGGCTGGCGGCAAAAGGAAGAAGCACACTCACCAGAAGGCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCCATCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
NA
A:
PF147481=P5CR_dimer=PU(16.9=86.7)
C2:
PF147481=P5CR_dimer=PD(80.5=74.7),PF0275914=RUN=PU(82.0=60.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGCTCCTGATCCCTTC
R:
GGATGTGCTTGGCATGCAGG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: