GgaEX1044491 @ galGal4
Exon Skipping
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1597590-1601091:-
Coord C1 exon
chr27:1600770-1601091
Coord A exon
chr27:1598949-1599025
Coord C2 exon
chr27:1597590-1597837
Length
77 bp
Sequences
Splice sites
3' ss Seq
CGCTGCCGTGTCCCCCACAGGTG
3' ss Score
12.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCCTGTGCCCTCTGCTGGGGCCGTGTCGCCCCCACCCCGCAGGTCCCATTTCCCCCATTGGGGCTGACATCGTTCCAGGCTGCGCTGCGCCCCATTCCCACCGTGTGGTGAATTCTGTTCCTGCCGTGCTGACGTGGATCGGTGCGGCCACGAGGAGCTCCGCTCTGTGCTCTCAGTGCCGCCCTCCCCAACAGCAGCCCCTGATCCAAAGGGCCGCCGCCTCCCCTCGCTGTGACAGCCCTGAGAAGCGCCGTCCTGCAGCCAAAGGCTCCGTGTGGAACACCCGGCTGCTGCAGGCACAGCTCAGCCCACGGCACTGAG
Seq A exon
GTGACATGTGACCGCGGGTGGGAGCAGCAGCTGAGATGCATTCGAGCCACGCCGATGACCCCAAGGAAGTCATCCAG
Seq C2 exon
CTGATCAAGAAGCAGCTGGTGAGCTCCATCAAGGCCCTGCAGAAGCAGTACGTCTCCTCGGATGCGGTGGTGACCAGCGATGATGGGAACGCCAACACGCTGTGCTGTGCCCTGGAGGCCGTCTTTGTGCACGGGCTGAAGGCGAAGCACATCAGGACGGAGGCGGGGGGCAAAGGGAGGAAAGCAGGCGGCCGGCTGCCCCTCCCCCAGCCCGTCTTCTGGGCCCTGCTGAAGGGCATCACACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201-'1-8,'1-7,9-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0275914=RUN=PU(37.3=60.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACAGCCCTGAGAAGC
R:
GTTCCCATCATCGCTGGTCAC
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]