MmuEX6090283 @ mm10
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103397027-103412687:-
Coord C1 exon
chr11:103412593-103412687
Coord A exon
chr11:103403825-103403910
Coord C2 exon
chr11:103397027-103397274
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTGTTTCTTCAGGTG
3' ss Score
11.81
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCTGTTGTCAGTGCCTTTGGAGCCGCAGCTTCTGCTCGGAACCGAGGGGGGTCTCGCTTCGCCCGGAGCGCCGCCACCTGCTCCTGATCCCTTCG
Seq A exon
GTGTCATGTGAGTCTCCCTCAGAGCTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGTGCTGCCATCCAG
Seq C2 exon
GTCATCAAGAAGAAGCTCGTGGGATCCGTGAAGGCTCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCCAACACCATGTGCAGTGCCCTGGAGGCTGTGTTCATCCACGGCCTGCATGCCAAGCACATCCGCGCCGAGGCTGGCGGCAAAAGGAAGAAGCACACTCACCAGAAGGCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCCATCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0275914=RUN=PU(37.3=60.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTGTCAGTGCCTTTGGA
R:
GGTGACCACTGTGTCCAGAGA
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types