RnoEX0067106 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91486182-91500661:-
Coord C1 exon
chr10:91500552-91500661
Coord A exon
chr10:91492506-91492591
Coord C2 exon
chr10:91486182-91486429
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTCTGTTCCTTCAGGTG
3' ss Score
12.54
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GACGCCGCGCGCCGCTTCCTGTTGTCAGTGCCTCTGGAGCCGCGGCTTTTTCTCCGAACTGAGGCGTTTCGCTTTGCCTGGAGCTCCGCCACCTGCTCCTGCTCCCTTTG
Seq A exon
GTGTCATGTGAGTCTCCTTGAGAACTGCTGCCCGAGTGGAAATGCTCTCAGTGGAGAATGGCCTGGACCCTCGGGCTGCCATCCAG
Seq C2 exon
GTCATCAAGAAGAAGCTAGTGGGATCTGTGAAGGCCCTGCAGAAACAGCATGTGTCTCTGGACACAGTGGTCACCAGTGAAGATGGAGATGCTAACACCATGTGCAGTGCCCTGGAGGCCGTGTTCATCCATGGCTTGCATGCCAAGTACATCCGTGCTGAGGCTGGCGGCAAAAGGAAGAAGCACACTCATCAGAAGCCTCTGCCTCAGCCTGTCTTCTGGCCCCTTCTGAAAGCTGTCACCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521-'1-5,'1-1,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0275914=RUN=PU(37.3=60.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGTCAGTGCCTCTGGAG
R:
GGTGACCACTGTGTCCAGAGA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]