DreEX0059418 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9346735-9354253:-
Coord C1 exon
chr21:9353826-9354253
Coord A exon
chr21:9349510-9349653
Coord C2 exon
chr21:9346735-9346828
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCGGTCTTCTCTGTTTACAGGGG
3' ss Score
9.36
5' ss Seq
AAGGTTTCC
5' ss Score
-1.1
Exon sequences
Seq C1 exon
ACTCTCCTTCTGGAGCCCATCACTATAATCCAGCCACACAAATCCAAGAATTAGACATGGACTCATCCTCTGAAGATCATACCCGCTCCCCGAGCCCTCCTTTTACAGCCAGCAAAACTTCGCCACCTCAGTCCATTCGGCAGGGCAGCATCAGCTCACAGGACTCCAAGACGGAAAGCGCCGGCCTCCAGCAAACACACCTCAATGGATTCCACAAAAACATTCCCATGGAGGGTCCCGTAGCAGCACAAGCTCTCCCTGCAGACATCAAACCTTCTATTGAAGCCATGCCACCAGCTTTGCCTCCTAAAACCAGAAAAGCTAAAGCCGCCGACGTCCCGAAAGAACTGGAATACTCTGACCGAGGGGATTCAGACATGGATGAAGACACGTACTCGAATAGCCAAGACAAATTAAAGACTAAAAAG
Seq A exon
GGGGTTTCTCCCATCACCATCACGGAGACTTTAAGTGCTAGTAGCCCAGACGTCAATAGCCTCCACCCTGGAGATCTATTTGACATTGAGCTGTCTAAAATAGACAGCAGTCTGGGCATTAGTGTCACGGTACTGTTTGGAAAG
Seq C2 exon
GGTGGATCAAACACATCGTTGAAGCATGGAGGGATTTACGTTAAAGGAGTCATTCCTAAAGGAGCTGCTGAGCAGGATGGGAGGATAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=0.370 C2=0.430
Domain overlap (PFAM):
C1:
NO
A:
PF0059519=PDZ=PU(18.1=34.9)
C2:
PF0059519=PDZ=FE(37.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCCCTGCAGACATCAA
R:
GCTCAGCAGCTCCTTTAGGAA
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]