Special

BtaEX0028974 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) (PTPN13), mRNA. [Source:RefSeq mRNA;Acc:NM_174590]
Coordinates
chr6:103493426-103496412:+
Coord C1 exon
chr6:103493426-103493889
Coord A exon
chr6:103494955-103495086
Coord C2 exon
chr6:103496319-103496412
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTCTTTGTTAAGGAA
3' ss Score
7.04
5' ss Seq
ACGGTACTG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGCCTTCTACTCCTGTGCACATGGCCAACGGCACGAAAAACTACATGAAAAAGCCTTCCCACCTGCAAGACGGCACTGTAAATTCTTCTGAGGACCACTGCTGGCCACGGGGCACCCCGAGGCACATCTCAGAGAGCTCTTTTGGGCTGTCTGGGGGCCTGCGGGAGGGCAGCCTGAGCTCTCAAGATTCCAGGACTGAGAGTGCCAGCTTGTCACAGAGCCAGGTCAACGGGTTCTTTGCCAGCCATGCAGCTGACCGCAGCTGGCAGGACTCACAGCGTGGCAGCCCTTCCCCATCTGTGATATCCAAAGCCACCGAGAAAAAGTGGACTTCTACTGATAGTAACCGAAGCAAAGCTAAAAATACAGGCATTTCTGATGCACCAGATTACTCTGACCGTGGAGATTCAGACATGGATGAAGCCACTTATTCCAGCAGTCAGGATCATCACATACCAAAAAAG
Seq A exon
GAATCTTCCTCCTCCATGAATACATCCAACAAAATGAATTTTAAAACTTTTCCTTCATCACCTCCTAAACCTGGAGATATCTTTGAGGTTGAACTGGCTAAAAATGATAACAGCTTGGGGATAAGTGTCACG
Seq C2 exon
GGAGGTGTGAATACCAGTGTCAGACATGGTGGCATTTATGTGAAAGCCGTTATTCCCAAGGGAGCAGCAGAGTCTGATGGCAGAATTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014947_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.987 A=0.864 C2=0.406
Domain overlap (PFAM):

C1:
NO
A:
PF0059519=PDZ=PU(18.1=34.1)
C2:
PF0059519=PDZ=FE(37.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTCCCCATCTGTGATA
R:
TCTGCTGCTCCCTTGGGAATA
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development