RnoEX0071157 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7730115-7733051:-
Coord C1 exon
chr14:7732594-7733051
Coord A exon
chr14:7731582-7731713
Coord C2 exon
chr14:7730115-7730208
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTCTCTTCCTCAAGGAA
3' ss Score
8.11
5' ss Seq
ACGGTACTG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGCCTTCTACTCCTGTTCACTTTGCCAATGGAATGAAAAACTACACCAAGAAACCGTCCTCCATGCAGGACAGTGCTATGGACCCATCAGAGGACCAGCCCTGGCCACGGGGCCCTCTGAGGCACGTCCCAGAGAGTCCCTTTGGTCTCTCCTCGGGCCTGCGGGAAGGAAGCCTCAGTTCCCAAGATTCCAGGACTGAAAGTGCCAGCTTGTCCCAGAGCCACGTCAATGGCTTCTTTACCAGCCACTTAGGTGACCGAGGCTGGCAGGAGCCACAGCACAGCAGCCCATCACCACCTGTAACCTCCAAGATCACCGAGAAGACCTTCTCTGACAGTTACCGTAGCCCGGCCAGGCGGCAAGGCACCTGTGATGTGACTGAGCTCCCTGGCTGTGCCGACTCCGACATAGACGATCCCACTTACAGCAGCAGTCAAGACCGTCAGGCACCAAAACAG
Seq A exon
GAACCTTCCTCCCCACTGAAAGCATCCGACAAAATGAGCTTTGCAGCCTTCCCTGGGCCATCCCCTGAGCCGGGAGACGCGTTTGAGGTCGAGCTGGCTAAAACCGATGGCAGCTTGGGGATAAGTGTCACG
Seq C2 exon
GGAGGTGTGAATACCAGCGTCCGGCATGGTGGTATCTATGTGAAAGCCGTTATTCCCAACGGAGCGGCAGAGACAGATGGCAGAATTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'40-42,'40-40,41-42
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.955 C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
PF0059519=PDZ=PU(18.1=34.1)
C2:
PF0059519=PDZ=FE(37.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCCACTTAGGTGACCG
R:
GGACGCTGGTATTCACACCTC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]