Special

MmuEX6019179 @ mm10

Exon Skipping

Gene
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103554696-103557972:+
Coord C1 exon
chr5:103554696-103555153
Coord A exon
chr5:103556088-103556219
Coord C2 exon
chr5:103557879-103557972
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTCTTCGTCAAGGAA
3' ss Score
5.91
5' ss Seq
ACGGTACTG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGCCTTCTACTCCTGTTCATTTTGCCAATGGGATGAAAAGCTACACAAAGAAACCGGCATACATGCAGGACAGTGCTATGGACCCATCAGAGGACCAGCCCTGGCCACGGGGTACTCTGAGGCACATCCCAGAGAGTCCCTTCGGGCTGTCTGGGGGCCTGCGGGAGGGAAGCCTCAGTTCCCAAGATTCCAGGACTGAAAGTGCCAGCCTATCCCAGAGCCAAGTCAACGGCTTCTTTGCCAGCCACTTAGGCGACAGAGGCTGGCAGGAACCACAGCATAGCAGCCCATCGCCATCTGTGACAACCAAGGTCAACGAGAAGACCTTCTCCGACAGTAACCGAAGCAAGGCCAAGCGGCGAGGCATCTCCGATTTGATTGAACACCTCGACTGTGCTGATTCCGACAAAGACGATTCCACTTACACCAGCAGTCAAGACCATCAAACGTCAAAACAG
Seq A exon
GAACCTTCCTCCTCACTGAGTACATCGAACAAAACGAGCTTTCCAACCTCGTCTGCGTCACCTCCTAAGCCCGGAGACACGTTTGAGGTTGAGCTGGCTAAAACTGATGGCAGCCTGGGGATAAGTGTCACG
Seq C2 exon
GGAGGTGTGAATACCAGCGTCCGACATGGTGGTATTTATGTGAAAGCCATTATTCCCAAAGGAGCGGCAGAGTCAGATGGCAGAATTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.980 A=0.955 C2=0.594
Domain overlap (PFAM):

C1:
NO
A:
PF0059519=PDZ=PU(18.1=34.1)
C2:
PF0059519=PDZ=FE(37.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCATCTGTGACAACCA
R:
ATCTGACTCTGCCGCTCCTTT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types