MmuEX6019179 @ mm9
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103983715-103986991:+
Coord C1 exon
chr5:103983715-103984172
Coord A exon
chr5:103985107-103985238
Coord C2 exon
chr5:103986898-103986991
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTCTTCGTCAAGGAA
3' ss Score
5.91
5' ss Seq
ACGGTACTG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TGCCTTCTACTCCTGTTCATTTTGCCAATGGGATGAAAAGCTACACAAAGAAACCGGCATACATGCAGGACAGTGCTATGGACCCATCAGAGGACCAGCCCTGGCCACGGGGTACTCTGAGGCACATCCCAGAGAGTCCCTTCGGGCTGTCTGGGGGCCTGCGGGAGGGAAGCCTCAGTTCCCAAGATTCCAGGACTGAAAGTGCCAGCCTATCCCAGAGCCAAGTCAACGGCTTCTTTGCCAGCCACTTAGGCGACAGAGGCTGGCAGGAACCACAGCATAGCAGCCCATCGCCATCTGTGACAACCAAGGTCAACGAGAAGACCTTCTCCGACAGTAACCGAAGCAAGGCCAAGCGGCGAGGCATCTCCGATTTGATTGAACACCTCGACTGTGCTGATTCCGACAAAGACGATTCCACTTACACCAGCAGTCAAGACCATCAAACGTCAAAACAG
Seq A exon
GAACCTTCCTCCTCACTGAGTACATCGAACAAAACGAGCTTTCCAACCTCGTCTGCGTCACCTCCTAAGCCCGGAGACACGTTTGAGGTTGAGCTGGCTAAAACTGATGGCAGCCTGGGGATAAGTGTCACG
Seq C2 exon
GGAGGTGTGAATACCAGCGTCCGACATGGTGGTATTTATGTGAAAGCCATTATTCCCAAAGGAGCGGCAGAGTCAGATGGCAGAATTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=0.955 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
PF0059519=PDZ=PU(18.1=34.1)
C2:
PF0059519=PDZ=FE(37.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCATCTGTGACAACCA
R:
ATCTGACTCTGCCGCTCCTTT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: