DreINT0121941 @ danRer10
Intron Retention
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9346735-9349653:-
Coord C1 exon
chr21:9349525-9349653
Coord A exon
chr21:9346829-9349524
Coord C2 exon
chr21:9346735-9346828
Length
2696 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTG
5' ss Score
5.88
3' ss Seq
ACTTGTTTTTTCTGTCTTAGGGT
3' ss Score
11.69
Exon sequences
Seq C1 exon
GGGGTTTCTCCCATCACCATCACGGAGACTTTAAGTGCTAGTAGCCCAGACGTCAATAGCCTCCACCCTGGAGATCTATTTGACATTGAGCTGTCTAAAATAGACAGCAGTCTGGGCATTAGTGTCACG
Seq A exon
GTACTGTTTGGAAAGGTTTCCGCTCTTTGTTTTTCTTCTTTATTCCTCTTTTACTTACTTTTTGTGTGTGTGTGTGTGTGTTGTTTTTGTGCCCTTAGCCGTCGCTCCTTTTTGAAGCTCCTCGCTTGGCTTCAGTTTTGGGAAAGTAGATTTGACTCTTTGCATGCAGATTTTTTCAGGCATTTGAGTTGGCTCCTTCACTAACGGTAAAAGCCAAACACAGTAGGTAAAGACGAGTGCAGATGCACGCACAGATGCAGATGAATTGTGTTTTTAAAAGGGATAGTTCACCCAAAATCAAAAAGTCCTTGTTAATTTGCTTACCCACACCTCATACAAGATGTAGTTTTTTGTTCTTCCGTAGAACATTGAAGAAGATTTTTAGCTGAACTTGCTGTTTTTTGGATTAATATAATGGCACTGAATGGTGACAAGTTTTTGAGATTAAAAATAAATATACAAACTAAAATGAGTCCAAATCAATAGCCGTGCACGGAAAAAATGCTTTTTTGTCTTGTTTCTAGTCCAAATATTTCAAAGTTCTTATATCAAGTAACATTTTTTTGGCAAGCAAAACATATAGTCTTGTTTTCAGAAATAATATGCCAATATTAAATAAGTTTTTCCTTAAAACAAGCAAAATAATCTTCCATTGGGGTCAGCAAAATAATCTTGTTTTTCCTTTTGACATAAGATTATTTTGCTTACCCCATTGGAAGATTATTTAACTTGTTTTAAGGAAAAACTCACTTAATTTTGGCATTTTATATCTTAAAACAAGACAGTATGTTTTGCTTGTCTAGAAAATTCCATATAAAAAAATTCTAATATCTAATATTCTATAATATATCTAAAATATCTTATATCTCATATTCTATAAAAAATAAAATATCTAAGTTTTTAGATACTTGGACTAGAAACTCTAATTACAAATTAAACTAAAATCTAAGTACAAGTGCAGTGTGGCTCCTGATGATACACTATGGTCTTCTGGAGTGGAATGATTAGCCTGTGTAAGAAATTGAACATCGTTTATTATTAGTGTTAATCCCAAAAAATCTTAAATTAAGAATCAGTTTTAGACAAGCAGAACATTGTTTTAAGACAGTTTTTCCTTAAAACAAGCAAAGTGGTCTGTCGAATGGGCGAGCTAAATAATCTTATGTCAAAAGGTTATATTAGCTTGTTTTGAGGAAAAACTCCCTTTACAATACTAACATTTAAAATTAACATTTTATTTATTAAAATAATCTATAGAAAATTTATAGAACATGTAGAATTTTTTTCTTGATTATTAGAAATTTTAGATATTTGGACTAGAAACAAGACAAAAAAAAAATCCTGTTACTTTAGGCTGCTTTTTAAATTTTTTTGATTTTTTATTTTTTTTAAAGCATTTTCTAGACAACCAAAACATGTCAATGGGGTAAACTAAATAATCTTATGTCAAAAGGAAAAGCAAGATTATTTTGCTGACCCCATTGGCAGATTATTTTGCTTGTTTTGAGGAAAAACTTATTTTATAAAATAATCTGTCTTTTTTACTTGTTTACAAAATACATGTCTTAAAATTTGTAGATGTTTGGACTAGAAACAACACAAAAAATCTAAGAAAGCTATCCAGCGGCTAGTTCTCTACAACTCTCACATAGTCACCCACTAAAGCTAAAGGCTGATTTATACTTCTGCGTCAAGCGCACACGGATGGTCAAGTCGCATACCCCTCGTCGTGGCTGACACAGATGCTGATGTGCACCTCTCAAAAATTGCAACTGTACATCGCAATGACGCATAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAAAAAAATGCTTTGGTGAACACGCAACCTTAATGATGAAAGCATGAGGGAGCGCGATTGGACTGGAGGTCAGGTGATGCAGTTTGTTGATAGGTGTATTGGTAATTGCGTAATTTGTACGCAACACATTCGTCATTTAAATCGACCGGGCAACATTCACACATGTGCAGATAAATGTTTGACCAGGCTCTGGAATAATAAAATTGTAAATAATGTTCAGTTTCTTACATGGACTAATCGTTTAAATTCACAAGACCTCAGTGTGCCATCAGGAACCAAGGGGATTGATTTGGACTGTTTTGTATGTGTTTATTTTTAATCGAAAATCACCATTCACTGCTGTTATATGAATCACAAAGGACCCCAAATTAATCTACAAATCTTCCCTAATGTTCTACTGAAAAATAAAAAGCCGTCTACATGTTTGATGACCTGTGGATGAGTAAATTAACAGGATATTTAAATTTCTGGGTGAACTACCCCTTTAATGGAGAAGCACTAATGCCTGCATGGATTTGCATTTACTTGTCTGCGGTGTGATTTTGCAGTGAAGCTTTCCTGAGATTTATTAGCTTGTGGCTTTTTTTATTTTGTGATTTAATAGTTTTTTTTAAATGTCAGTGTTTTAAAAATACTGTAGTGAAATGCATTAATCAAGTCTAGAAATCAGGTGGTTTGCTCTTTATGTTTGTAAGGATGGGGGTCGCTGCTTTTTTTTTTAGATGGTTTAATCCAGAGAATGCATCTATGATTTAGATATATTAAAATGAGAATGTCCAGTTGATTTAACGCACATCCAAAACAGATTATTAGCAGGTTTTCTTCCGATGATGCTGTTCTCTGTAGGTATATTAACTTGTTTTTTCTGTCTTAG
Seq C2 exon
GGTGGATCAAACACATCGTTGAAGCATGGAGGGATTTACGTTAAAGGAGTCATTCCTAAAGGAGCTGCTGAGCAGGATGGGAGGATAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699:ENSDART00000162225:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=NA C2=0.430
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.1=34.9)
A:
NA
C2:
PF0059519=PDZ=FE(37.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]